Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g2224 ATGAATGCTCCTACCACCGTAACCGCCATCACCACCACACCGCCCAGTAGAGATGAACCCGACTACGACAGCAGCTCCTCCTCTATCACCGTGCCGGAATCTACCCGGAGCTGGATGACCAACCTCAGCTTCGGCAGCCGCCGCCGCCGGAGCTCCGTCTCCGTGTGCTCCTCCACCCTGGAGAGTCCGCACGCGAGGCCCCACAAGGCGAACCAGGCTGCATGGGAGGTCATGCGGCGGCTCCGTCGCGACAAGGGGCAGGTCGGTCTGGAGCACTTCCGCCTGATGCGGCGGCTCGGGAGCGGCGACATCGGGAACGTGTACCTTTGCCAGATAAGGAACCCCGTGGTGGGGTTGCCGCAGTGCTTTTATGCGATGAAGGTGGTGGACAGAGAGGCACTTGCGATAAGGAAGAAGCTGCAAAGGGCGGAGATGGAGAAGGAGATTCTGGCCATGCTTGATCACCCTTTCTTGCCTACTTTGTACACTGAGTTTGACGCTTCTCATTACTCTTGCTTGGTCATGGAGTTCTGCCCCGGTGGCGACTTGTACGCTGCACGCCAACGCCAGCCCGGGAAGCGCTTTTCTGTTACATCCACTAAGTTTTATTCGGCAGAGACGCTATTGGCATTAGAGTATCTTCACATGATGGGCATAGTGTACAGGGATTTGAAGCCAGAGAACGTGCTTGTGAGAGAGGATGGACACATTATGCTTTCAGATTTTGATCTTTCACTAAAATGTGACGTTGTGCCGAAGCTGTTAAGGAGTAAGACGAGAGTGGAACGCAGTATCAAGAGTACAAAGAGATCTGTGCCAGCCTGCACTGCCCCCATGCAGCCTGTGCTGTCATGTTTCTTGGCATCAAGCAAGAAGAAGAAAGCGACAGTGACAACAGTTATAAGAGAAAATGTTGAGGTGGAAGAGCTTGATCCGGAGCTGGTGGCTGAGCCTATTGATGCGAAGTCGAAGTCATTTGTGGGGACACACGAGTACTTGGCACCAGAAGTGATCTTGGGGCAAGGACATGGGAGTGCAGTGGACTGGTGGACGTTTGGGGTGTTCTTGTATGAGATGTTATACGGGAGAACACCCTTCAAAGGTGAAAATAATGAAAAAACTCTGGTCAACATTTTGAAGCAACCATTGGCTTTTCCCAGAATCGCAGTTAGCAGCAGCAAGGATTATGAAGAGATGGTGAAAGTTCAAGACCTTATAAGCAAGCTCTTGGTGAAGAATCCAAATAAGAGAATTGGAAGCTGTATGGGTTCTGTTGAGATCAAAAGGCATGAGTTCTTCAAGGGTGTGAATTGGGCCTTAATTAGATCAGTTAGGCCACCTGAAGTCCCCAGTGATATGAACAAAATTAGGAGTAGTAGGGTTTTGCTACCAAAACTAAGCAAAACAGACAGGGATCAGCCATATCAGCTTAGAACTCATCATTTTGAATACTTCTAA 1458 0.5062 MNAPTTVTAITTTPPSRDEPDYDSSSSSITVPESTRSWMTNLSFGSRRRRSSVSVCSSTLESPHARPHKANQAAWEVMRRLRRDKGQVGLEHFRLMRRLGSGDIGNVYLCQIRNPVVGLPQCFYAMKVVDREALAIRKKLQRAEMEKEILAMLDHPFLPTLYTEFDASHYSCLVMEFCPGGDLYAARQRQPGKRFSVTSTKFYSAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDLSLKCDVVPKLLRSKTRVERSIKSTKRSVPACTAPMQPVLSCFLASSKKKKATVTTVIRENVEVEELDPELVAEPIDAKSKSFVGTHEYLAPEVILGQGHGSAVDWWTFGVFLYEMLYGRTPFKGENNEKTLVNILKQPLAFPRIAVSSSKDYEEMVKVQDLISKLLVKNPNKRIGSCMGSVEIKRHEFFKGVNWALIRSVRPPEVPSDMNKIRSSRVLLPKLSKTDRDQPYQLRTHHFEYF* 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g2224 485 Gene3D Transferase(Phosphotransferase) domain 1 178 247 - -
Vra7g2224 485 Gene3D Phosphorylase Kinase; domain 1 91 177 - -
Vra7g2224 485 CDD STKc_phototropin_like 92 450 - -
Vra7g2224 485 ProSitePatterns Serine/Threonine protein kinases active-site signature. 219 231 IPR008271 GO:0004672|GO:0006468
Vra7g2224 485 Gene3D Transferase(Phosphotransferase) domain 1 320 451 - -
Vra7g2224 485 PANTHER FLIPPASE KINASE 1-RELATED 16 485 - -
Vra7g2224 485 MobiDBLite consensus disorder prediction 1 31 - -
Vra7g2224 485 Pfam Protein kinase domain 94 248 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra7g2224 485 Pfam Protein kinase domain 322 433 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra7g2224 485 SUPERFAMILY Protein kinase-like (PK-like) 75 454 IPR011009 -
Vra7g2224 485 Coils Coil 126 146 - -
Vra7g2224 485 SMART serkin_6 93 433 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra7g2224 485 PANTHER PROTEIN KINASE PINOID 2 16 485 - -
Vra7g2224 485 ProSiteProfiles Protein kinase domain profile. 93 433 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g2224 Vra-Chr7 42278109 42280186 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g2224 18 485 AGC Kinase Gene Family AT2G26700 58.095 0.0 577
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Vra7g2224 Pkinase 3.7e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g2224 K08286 - gmx:100777988 886.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2224 7 42278109 42280186 Vra7g2224 7 42278109 42280186 ECH
Vra7g2224 7 42278109 42280186 Vra3g1190 3 12631966 12633925 PCT