Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g2207 ATGTATGCACGTCACTTTATTTTTCTTCCCATCTTTTCACTTTCAGTTTCAGAGAATGTACAGCGCCTAGGGGAAGATGAAACACTGTCGAGATTTGATGCCATGCCATACCTTTCTTTCTTTCTTTCTTTCTTTTTATTTATTTTCCCTTCTTTTCAGCTTTCAGCCGTTACAAGGCCTCTTCATGCCTTTCCCACTCTTAACTATTTGCCAAGTTCAATGAAGGATCCAGCGGAGGATCAAATGAAATCTAGGAGTGCCCTGCAGAGATCAAAAGACCTTAGAAGAAGAGATAAAAGAAGAAGCCAATGCAAACAAGATAAATTGCAAGAAACAGGACTTGACTCGCAATTGGTTTCCTCTGCTTGCAAAAGTCTTGTGTTTCCTGCCAGACCTGGCTATGGCCAGCTGGGGACAAAGTGTCTGGTCAAAGCTAATCATTTCCTGGCAGATATATCAGCTTCTGACTTGAGCCATTACAATGTTACAATAACACCTGAAGTCACTTCTCGTAAAACAAGCAAAGCCATCATATCTGAGTTGGTGAGGCTTCACAGGAACACTGACTTGGGGATGAGGCTTCCTGTTTATGATGGAGGAAGAAATCTCTACACTGCTGGCTTGCTTCCATTTGCATACAAAGAGTTCTCCATAACATTGAGCCGGGATGACGAGGGTACTGGTGGTACCAGGGAAAGAGAATTTGAAGTGGTGATAAAGTTTGCAGCTCGTGTCAGCATGCATCAATTACGTGAGCTTCTGAGTGGGAAACAAGTGGACACCCCACAAGAGGCGCTTACTGTCATTGACATTGTATTGAGGGAGCTTGCAGCTCAGAGCTTCGTGTCAATTGGGAGGTTTCTCTATTCTCCGGATTTAAGAAAACCACAGCAGTTAGGTGGTGGTCTGGAATCATGGCGCGGCTTCTACCAAAGTATAAGGCCTACTCAGATGGGATTGTCCCTTAATATTGACATGTCATCAATGGCTTTTATTGAACCACTCCCTGTAATTGACTTTGTTGCTCAAATTTTGGGAAAAGACGTGCTCTCAAAGCCACTGTCAGATGCAGATCGTGTCAAGATTAAGAAAGCCTTAAGAGGTGTGAAAGTCGAAGTTACACATAGAGGAAGTTTTCGAAGGAAGTACAGAATTACAGGATTGACATCACAACCTACAAGGGAGCTCAATTTCCCTGTCGATGAGAAAATGAACATGAAATCAGTGGTTGATTACTTTCAAGAAATGTATGGATATACAATTATATATTCTCATCTACCCTGCCTTCAAGTAGGAAGTCAAAAGAAGGTGAACTATTTGCCTATGGAGGCATGTAAGATAGTTGGAGGTCAGAGATATACAAAAGGGCTTAACGAAAAGCAGATAACTTCTCTGTTGAAGGTCTCATGCCAGAGACCACGTGAACAAGAGACAGACATTCTACAGACAATTCAAGAAAATAATTATGAGTATAATCCCTATGTAAAGGAGTTTGGTATCAGCATTGACAGCAAACTTGCATCAGTTGAAGCTCGGGTTCTTCCTGCTCCATGGTTGAAATATCACGACACTGGAAGAGAGAAAGAACACTTGCCACAAGTTGGTCAATGGAACATGATGAACAAGAAAGTTATAAACGGAAGCACTGTAAGATATTGGGCATGTATCAATTTCTCACGAAGTATCCAAGAAATTGCTCGCGGGTTTTGCCAACAGTTGGTTCAAATGTGCCAAATCTCAGGCATGGAATTTAGTCTAGACCCTGTGATTCCTATATACACAGCAAGACCTGATATGGTAAAGAAAGCCTTGAAGTACGTACATTCTGCTGTGCGAGATAAACTTGGTGGGAAAGAACTAGAGTTGCTGATTGCCATTCTTCCAGACAACAATGGCTCTCTGTATGGTGATCTCAAAAGAATCTGCGAAACAGATCTGGGGTTGATTTCTCAGTGCTGTCTTTCAAAACACGTGTTCAAGATCAATAGACAGTATCTGGCAAATGTGGCCTTAAAGATCAATGTCAAGTTGGGAGGAAGGAACACAGTACTTTTGGATGCCTTAAGTTGGAGGATCCCATTGGTTAGTGACATTCCAACAATAATTTTCGGAGCTGATGTGACTCATCCAGAATCTGGAGAGGACCCTTGTCCATCCATTGCTGCTGTTGTAGCCTCCCAGGACTGGCCGGAAGTAACAAAGTATGCAGGATTAGTATGTACTCAGCCTCATCGTGAGGAACTCATTCAAGATCTTTTTAAATGTTGGAAGGATCCTCATCATGGTGTAGTTTATGGCGGCATGATCAGAGAGCTGTTACTCTCGTTTAAGAAGGCAACTGGACAAAAACCGCTGAGAATAATATTTTACAGGGATGGGGTAAGTGAAGGACAATTCTACCAGGTTTTGTTGTACGAACTTGATGCCATTCGTAAGGCTTGTGCATCTTTGGAACCGAGTTACCAACCTCCGGTAACATTTGTTGTGGTTCAGAAACGGCATCACACCAGACTATTCTCAAACAATCATGACGACAGAAACAGCACTGATAAGAGTGGGAATATCTTACCTGGTACCGTGGTGGATTCTAAGATCTGTCATCCGACGGAATTCGATTTCTATTTATGCAGTCATGCGGGAATTCAGGGTACAAGTAGACCAGCCCATTATCATGTTCTGTGGGACGAGAACAATTTCAGTGCTGATGAGATTCAATCTCTGACCAACAACTTGTGCTACACATATGCAAGATGTACACGATCTGTTTCTGTAGTGCCTCCTGCGTACTATGCTCACTTGGCAGCATACAGAGCTCGTTTCTACATGGAACCAGATGTTCATGAGATTGGTAAATCTCGAGGTGGTAGATCAAAAGATGAGTCAGTTCGGCCACTACCAGCTCTGAAAGAGAAGGTGAAGAATGTGATGTTTTACTGTTGA 2940 0.4252 MYARHFIFLPIFSLSVSENVQRLGEDETLSRFDAMPYLSFFLSFFLFIFPSFQLSAVTRPLHAFPTLNYLPSSMKDPAEDQMKSRSALQRSKDLRRRDKRRSQCKQDKLQETGLDSQLVSSACKSLVFPARPGYGQLGTKCLVKANHFLADISASDLSHYNVTITPEVTSRKTSKAIISELVRLHRNTDLGMRLPVYDGGRNLYTAGLLPFAYKEFSITLSRDDEGTGGTREREFEVVIKFAARVSMHQLRELLSGKQVDTPQEALTVIDIVLRELAAQSFVSIGRFLYSPDLRKPQQLGGGLESWRGFYQSIRPTQMGLSLNIDMSSMAFIEPLPVIDFVAQILGKDVLSKPLSDADRVKIKKALRGVKVEVTHRGSFRRKYRITGLTSQPTRELNFPVDEKMNMKSVVDYFQEMYGYTIIYSHLPCLQVGSQKKVNYLPMEACKIVGGQRYTKGLNEKQITSLLKVSCQRPREQETDILQTIQENNYEYNPYVKEFGISIDSKLASVEARVLPAPWLKYHDTGREKEHLPQVGQWNMMNKKVINGSTVRYWACINFSRSIQEIARGFCQQLVQMCQISGMEFSLDPVIPIYTARPDMVKKALKYVHSAVRDKLGGKELELLIAILPDNNGSLYGDLKRICETDLGLISQCCLSKHVFKINRQYLANVALKINVKLGGRNTVLLDALSWRIPLVSDIPTIIFGADVTHPESGEDPCPSIAAVVASQDWPEVTKYAGLVCTQPHREELIQDLFKCWKDPHHGVVYGGMIRELLLSFKKATGQKPLRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPSYQPPVTFVVVQKRHHTRLFSNNHDDRNSTDKSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFSADEIQSLTNNLCYTYARCTRSVSVVPPAYYAHLAAYRARFYMEPDVHEIGKSRGGRSKDESVRPLPALKEKVKNVMFYC* 980
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g2207 979 SUPERFAMILY Ribonuclease H-like 613 944 IPR012337 -
Vra7g2207 979 Gene3D - 691 979 IPR036397 GO:0003676
Vra7g2207 979 MobiDBLite consensus disorder prediction 78 93 - -
Vra7g2207 979 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 90 978 - -
Vra7g2207 979 Pfam Piwi domain 623 942 IPR003165 GO:0003676
Vra7g2207 979 SMART DUF1785_2 282 334 IPR014811 -
Vra7g2207 979 Pfam Mid domain of argonaute 532 608 IPR032473 -
Vra7g2207 979 Gene3D paz domain 329 453 - -
Vra7g2207 979 CDD PAZ_argonaute_like 334 448 - -
Vra7g2207 979 Pfam Argonaute linker 1 domain 283 332 IPR014811 -
Vra7g2207 979 CDD Piwi_ago-like 493 942 IPR045246 -
Vra7g2207 979 SMART PAZ_2_a_3 339 471 IPR003100 GO:0005515
Vra7g2207 979 Pfam PAZ domain 360 465 IPR003100 GO:0005515
Vra7g2207 979 PANTHER PROTEIN ARGONAUTE 10 90 978 - -
Vra7g2207 979 Pfam Argonaute linker 2 domain 477 521 IPR032472 -
Vra7g2207 979 ProSiteProfiles Piwi domain profile. 622 943 IPR003165 GO:0003676
Vra7g2207 979 Gene3D - 513 685 - -
Vra7g2207 979 MobiDBLite consensus disorder prediction 75 107 - -
Vra7g2207 979 ProSiteProfiles PAZ domain profile. 335 449 IPR003100 GO:0005515
Vra7g2207 979 SUPERFAMILY PAZ domain 330 489 IPR036085 GO:0005515
Vra7g2207 979 SMART Piwi_a_2 622 943 IPR003165 GO:0003676
Vra7g2207 979 Pfam N-terminal domain of argonaute 140 273 IPR032474 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g2207 Vra-Chr7 42043918 42056503 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g2207 113 979 Eukaryotic Initiation Factors Gene Family AT5G43810 73.744 0.0 1390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g2207 K11593 - gmx:100808457 1720.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2207 7 42043918 42056503 Vra7g2207 7 42043918 42056503 ECH
Vra7g2207 7 42043918 42056503 Vra2g1567 2 23566500 23578652 PCT