Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g2206 ATGACGATGGACGACGATAGCTCTATATATGTTGGGGGTCTCCCTTACGACATCACCGACGAAACCATTCGCACTGTCTTCAATTTGTATGGTGCCATTCTCGATGTGAAGATTATCAACGACCAACGCGGTAGGGGGAAGTGCTATTGTTTTGTTACTTTCACGAATCCTAGGTCAGCGATCGACGCCATCAACGACATGAATGGCAGAACCATTGACGGGCGTGTGGTTAAAGTTAATGGGGTGAGGTCTCGTGGGGGCAGGTCAAACTTTGGCAGAGAACGGTATTACTATCATAATGATGAGAGGAATGGAGATTGGGATCGTGGGAGAGATCGAGACAGAGATTATGATCATGATAATAGTGGTAGGGATGGATACAGGAATCGGAACAATGATTGGAGTCGGGACCGTGATAGGTCTCGAGACCGAGACCAGGATAGGGATAGAAGATTTGAGCATATGCATGACTATGATGAAGATAGAGATCCTATGTTAGATAATGACTGGGGTAGAGAGGATGATAGAGTTGAAAATGATCAAGAACATAGCAGGGGGGATGGTGGAGATGTGGATAGAGACCACAACTTGGATTTTAATGCAGACAGGAAAACGGATAGGTCAAGTGACCCTGATAGAAGTTTTGACGAGGATAGAAAAGATCAGTCAAGGAGAAACAATGACTTGAATGTTACAAATCAACATAGCATGGATCTTTCATCAGAGTCAACTGGTGCCGATGATGATCAGGTAGAAGCTCAATTAGAGAGCTCAACTAAGCAGTTTGATCAACTCAAAAAAGAGGTTTCTCAAATGGAAGAGGGATTAGAAGAGAAAAGGGTCCATGTTAAGGAATTGCAAAAGCAATCTAAGAAACTGGAGGATGCACTGGTCAATGCTAAGAAAAACACTTCATATCGTCAGATGCAGTTGATAAAGGCTCTAATTGATTCAGTATTGTTAGAGATTGATGGTGATGGCGTTGGATTCAAGGATGGACAACTAACAAATGGAAGTCTTGATGCTAGATAG 1032 0.4293 MTMDDDSSIYVGGLPYDITDETIRTVFNLYGAILDVKIINDQRGRGKCYCFVTFTNPRSAIDAINDMNGRTIDGRVVKVNGVRSRGGRSNFGRERYYYHNDERNGDWDRGRDRDRDYDHDNSGRDGYRNRNNDWSRDRDRSRDRDQDRDRRFEHMHDYDEDRDPMLDNDWGREDDRVENDQEHSRGDGGDVDRDHNLDFNADRKTDRSSDPDRSFDEDRKDQSRRNNDLNVTNQHSMDLSSESTGADDDQVEAQLESSTKQFDQLKKEVSQMEEGLEEKRVHVKELQKQSKKLEDALVNAKKNTSYRQMQLIKALIDSVLLEIDGDGVGFKDGQLTNGSLDAR* 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g2206 343 MobiDBLite consensus disorder prediction 108 226 - -
Vra7g2206 343 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 78 IPR000504 GO:0003723
Vra7g2206 343 MobiDBLite consensus disorder prediction 108 253 - -
Vra7g2206 343 MobiDBLite consensus disorder prediction 227 253 - -
Vra7g2206 343 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 1 313 - -
Vra7g2206 343 SMART rrm1_1 8 80 IPR000504 GO:0003723
Vra7g2206 343 CDD RRM_SF 9 80 - -
Vra7g2206 343 SUPERFAMILY RNA-binding domain, RBD 4 112 IPR035979 GO:0003676
Vra7g2206 343 Coils Coil 248 303 - -
Vra7g2206 343 Gene3D - 2 97 IPR012677 -
Vra7g2206 343 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 84 IPR000504 GO:0003723
Vra7g2206 343 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 1 313 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g2206 Vra-Chr7 42033050 42037133 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g2206 7 79 Eukaryotic Initiation Factors Gene Family AT2G36660 34.247 3.14e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g2206 - - vun:114179118 596.275
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2206 7 42033050 42037133 Vra7g2206 7 42033050 42037133 ECH