Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g2205 ATGGCATCACCATCAGAACTTACTCTTGATTGCAAGCCCCAAAGCTATTCCTTGCTACTCAAATCCTTTGGAGATCAAACTGATCAGACCTACAAGCTTGAAGAATTCCTCTCTCGCTTAGAGGAAGAACGTCTCAAGATTGACGCCTTCAAGCGTGAGCTTCCTCTCTGCATGCAACTTCTCACCAACGCCATGGAGGCTTCAAGACAGCAACTTCAAGCCTTTAAAGTAAACCATGGTGCAAAACCGGTTCTGGAAGAATTCATACCGATGAAGCACTTGGCCTCAGAAAGCTCAGAGAAGGCAACAAACATGTCTGACAAGGCAAATTGGATGACATCTGCGCAACTTTGGAGCCAAGCGAGTGAAGGAGCCAAACACCAACCAACATTAACATCACCCAAAGAAGCTGATATAGGCTTCAGCATCAGCCCCAAGCTGGCTCTGGACAACAAGCAGAGGAACGGTGGAGGAGCCTTCCTTCCATTTTCAAAGGAAAGAAACTCCTGCCAAGGCTCCACATTGCGGCCTCTACCTGAACTTGCCCTTGCCTCTTCGGAGAAAGAAATGGAGGACAAGAAACGTGCAGAGGCAGAAAAGGGACTTTCGTGTCAGAATAAGAAGGAAAATTCTGGCAGTGATGGAGCTGTGGTTGATCAAGGAAAAAGTGGTAGCCCAGTTGCATCATCTCTTGCACAAACAACGACAACCACTTCGCAAACTCATAGGAAAGCTAGAAGGTGCTGGTCACCAGACTTGCACCGTCGATTTGTTAATGCTCTCCAGATGCTCGGTGGATCACAAGTGGCAACCCCAAAGCAGATAAGGGAGTTGATGAAGGTTGACGGTTTGACCAATGATGAAGTTAAAAGCCATTTGCAGAAATATAGGCTTCACACAAGAAGACCCAGTCCAAGTCCTCAAGCGAATGCAGCAGCTCCACAGCTCGTGGTCCTAGGCGGAATCTGGGTCCCACCGGAATATGCCACTGCGGCACACACAGCCACCCCAACTCTCTACGGCGCCCACCCAACCTCTCACGCCCCGCCGCCACACTACTGCACTGCCACTCCTGTGCCGCAAGAGTTCTACACTGCGGCGCCGCAGCAGCAGCTGCTTCCGCCTCCTCCGCCTCATCACAACCCGTTGCACCACCTGCACATGTACAAGGCAACGGCACACGGGCATGGGTCGCCGGAGTCGGACGTTCCCGGCGGAGGAGAGAGGTCGGAGAGCATTGAGGACGGGAAGTCGGAGAGTAGCAGCTGGAAGGGAGAGAGTGGGGAGAACGAAGGGGAGAGGAAAGGGATTTGTGAAGAGAGCAATGGGAGTGAAATCACTCTGAAATTCTAG 1353 0.5159 MASPSELTLDCKPQSYSLLLKSFGDQTDQTYKLEEFLSRLEEERLKIDAFKRELPLCMQLLTNAMEASRQQLQAFKVNHGAKPVLEEFIPMKHLASESSEKATNMSDKANWMTSAQLWSQASEGAKHQPTLTSPKEADIGFSISPKLALDNKQRNGGGAFLPFSKERNSCQGSTLRPLPELALASSEKEMEDKKRAEAEKGLSCQNKKENSGSDGAVVDQGKSGSPVASSLAQTTTTTSQTHRKARRCWSPDLHRRFVNALQMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYRLHTRRPSPSPQANAAAPQLVVLGGIWVPPEYATAAHTATPTLYGAHPTSHAPPPHYCTATPVPQEFYTAAPQQQLLPPPPPHHNPLHHLHMYKATAHGHGSPESDVPGGGERSESIEDGKSESSSWKGESGENEGERKGICEESNGSEITLKF* 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g2205 450 MobiDBLite consensus disorder prediction 159 248 - -
Vra7g2205 450 Coils Coil 33 53 - -
Vra7g2205 450 MobiDBLite consensus disorder prediction 393 450 - -
Vra7g2205 450 Gene3D - 243 301 - -
Vra7g2205 450 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 244 299 IPR006447 GO:0003677
Vra7g2205 450 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 1 450 - -
Vra7g2205 450 Pfam Myb-like DNA-binding domain 246 297 IPR001005 -
Vra7g2205 450 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 450 IPR044787 GO:0003700|GO:0006355
Vra7g2205 450 Coils Coil 58 78 - -
Vra7g2205 450 MobiDBLite consensus disorder prediction 205 244 - -
Vra7g2205 450 SUPERFAMILY Homeodomain-like 241 302 IPR009057 -
Vra7g2205 450 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 241 301 IPR017930 -
Vra7g2205 450 MobiDBLite consensus disorder prediction 185 204 - -
Vra7g2205 450 MobiDBLite consensus disorder prediction 407 440 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g2205 Vra-Chr7 42023793 42026699 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g2205 1 450 G2-like Transcription Factor Family AT2G03500 50.104 3.08e-132 387
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vra7g2205 Myb_DNA-binding 9.7e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g2205 - - gmx:100807925 781.941
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2205 7 42023793 42026699 Vra7g2205 7 42023793 42026699 ECH
Vra7g2205 7 42023793 42026699 Vra2g1568 2 23593978 23596743 PCT