Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g2204 ATGGCGTTGCTCTCAATTATCTTTTTCCTCCTCCAACTCACTTTTCATGTCAGAGTTAACTCGGAGCCGACTCAGGACAAGCAAGCCCTCCTTGCTTTCCTCTCCCAAACCCCACACTCCAACCGCCTCCAATGGAACGCTTCCGCTTCCGCATGCGACTGGGTGGGTGTCAAATGCGACGACTCCCGCTCCTTCGTCTACTCGCTCCGTTTACCCGCCGTCGACCTCGTGGGTCCGGTTCCACCCTCCACAATCGGTCGCCTCTCCCAGCTTCGGATCCTCAGTCTCCGCTCCAACGGTCTCACCGGCGAGATCCCTGCGGATTTCTCAAACCTCACCTTCCTCCGCAACCTCTACCTCCAGAAGAACCAGTTCTCCGGTGAGTTCCCTCCGAGTCTCACTCGCCTCACTCGTCTCACTCGCCTGGATCTCTCCTCCAACAACTTCACCGGTCAAATCCCTTTCTCCGTCAACAACTTAACCCACCTCACCGGCCTCTTCTTGGAGCAAAACAGCTTCTCTGGGAAAATCCCCAGCATCACTGCCAAACTCGTTAGCTTCAATGTTTCCTTCAACCGCCTCAACGGTTCCATTCCGGAGACGCTCTCCACTTTCCCGGACTCCTCATTCGCAGGAAACGTAGATCTCTGTGGCCCGCCGTTGAAGGCCTGCAACCCCTTCTTCCCGGCTCCGGCGCCGTCTCCCTCCTCCAATTCGACCCCGGCCACGACGCATAAGAAGTCCAATAAGCTCTCCACGGGCGCCATTGTCGCAATCGTTGTCGGGTCCGTTCTCGTCGCGGCGTTGCTGTTGCTGCTGCTGCTGCTGTGCCTCCGGCGCCGGCGACGGCAGCCAGCGAAACCGCCGAAGCCTGTTGCGGCGGCACGTGCCGTTCCGGTGGAGGCGGGGACGTCGTCGTCGAAGGAGGATATCACCGGGGGTTCTGCGGAGGCGGAGAGGAACAAGCTGGTGTTCTTTGAAGGGGGGATATACAGTTTCGATTTGGAGGATTTGTTGAGGGCTTCGGCGGAGGTGTTGGGGAAGGGCAGCGTGGGGACTTCGTACAAGGCGGTGCTGGAGGAAGGAACGACGGTGGTGGTGAAGAGGCTGAAAGATGTTGTGGTGACAAAAAAGGAATTCGAGATGCAAATGGAAGTTCTGGGGAAGATTAAGCACGATAATGTGGTGCCTCTCAGAGCCTTTTACTTCTCCAAGGACGAGAAATTGCTCGTTTACGATTACATGTCTGCAGGCAGCTTGTCTGCTCTCCTTCACGGGAGCAGAGGGTCTGGGAGAACACCACTGGACTGGGACAGCAGAATGAAAATAGCAGTAGGAGCAGCACGGGGTTTGGCATGCCTCCACGTGGCAGGCAAGGTGGTCCACGGCAACATAAAATCTTCCAACATCCTCCTCCGAGGGCCGGACCACGATGCCGGCGTTTCGGACTTTGGTCTAAACCCCTTGTTCGGGAACGGAGCCCCGTCGAACCGAGTGGCGGGTTACCGGGCACCCGAGGTGGTCGAAACTCGAAAGGTGAGCTTCAAGTCTGACGTGTACAGCTTTGGCGTCTTGCTGTTGGAGCTTCTGACGGGGAAAGCTCCGAACCAAGCGTCTCTTGGGGAAGAGGGCATCGACCTCCCGAGGTGGGTCCAGTCGGTGGTGCGCGAAGAGTGGACCGCGGAGGTGTTCGACGCGGAGCTCATGAGGTATCACAACATCGAGGAAGAGATGGTTCAGCTCTTGCAAATAGCCATGGCGTGTGTTGCGGTGGTGCCTGACCAGAGGCCCAGCATGCAGGAGGTGGTGCGCATGATCGAGGACATCAACCGGGGCGAGACCGACGACGGCTTGCGTCAGTCCTCCGATGACCCTTCTAAAGGATCTGAGGGTCACACTCCTCCCCCGGAGTCAAGGACTCCGAGGTCACTCACACCTTAA 1941 0.5786 MALLSIIFFLLQLTFHVRVNSEPTQDKQALLAFLSQTPHSNRLQWNASASACDWVGVKCDDSRSFVYSLRLPAVDLVGPVPPSTIGRLSQLRILSLRSNGLTGEIPADFSNLTFLRNLYLQKNQFSGEFPPSLTRLTRLTRLDLSSNNFTGQIPFSVNNLTHLTGLFLEQNSFSGKIPSITAKLVSFNVSFNRLNGSIPETLSTFPDSSFAGNVDLCGPPLKACNPFFPAPAPSPSSNSTPATTHKKSNKLSTGAIVAIVVGSVLVAALLLLLLLLCLRRRRRQPAKPPKPVAAARAVPVEAGTSSSKEDITGGSAEAERNKLVFFEGGIYSFDLEDLLRASAEVLGKGSVGTSYKAVLEEGTTVVVKRLKDVVVTKKEFEMQMEVLGKIKHDNVVPLRAFYFSKDEKLLVYDYMSAGSLSALLHGSRGSGRTPLDWDSRMKIAVGAARGLACLHVAGKVVHGNIKSSNILLRGPDHDAGVSDFGLNPLFGNGAPSNRVAGYRAPEVVETRKVSFKSDVYSFGVLLLELLTGKAPNQASLGEEGIDLPRWVQSVVREEWTAEVFDAELMRYHNIEEEMVQLLQIAMACVAVVPDQRPSMQEVVRMIEDINRGETDDGLRQSSDDPSKGSEGHTPPPESRTPRSLTP* 647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g2204 646 Gene3D Ribonuclease Inhibitor 23 181 IPR032675 -
Vra7g2204 646 SUPERFAMILY Protein kinase-like (PK-like) 344 609 IPR011009 -
Vra7g2204 646 Pfam Protein kinase domain 343 604 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra7g2204 646 Pfam Leucine rich repeat N-terminal domain 24 60 IPR013210 -
Vra7g2204 646 Gene3D Transferase(Phosphotransferase) domain 1 415 627 - -
Vra7g2204 646 Pfam Leucine Rich Repeat 90 112 IPR001611 GO:0005515
Vra7g2204 646 CDD STKc_IRAK 346 609 - -
Vra7g2204 646 PANTHER OS05G0588300 PROTEIN 9 627 - -
Vra7g2204 646 MobiDBLite consensus disorder prediction 288 313 - -
Vra7g2204 646 SUPERFAMILY L domain-like 25 205 - -
Vra7g2204 646 MobiDBLite consensus disorder prediction 608 646 - -
Vra7g2204 646 Gene3D Phosphorylase Kinase; domain 1 307 414 - -
Vra7g2204 646 Gene3D Ribonuclease Inhibitor 184 224 IPR032675 -
Vra7g2204 646 MobiDBLite consensus disorder prediction 608 626 - -
Vra7g2204 646 ProSiteProfiles Protein kinase domain profile. 340 609 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra7g2204 646 PANTHER OS05G0480400 PROTEIN 9 627 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g2204 Vra-Chr7 42005435 42008931 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g2204 6 627 Receptor kinase-like Gene Family AT5G58300 53.249 0.0 622
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vra7g2204 Pkinase 9.4e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g2204 - - gmx:100806857 1047.34
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2204 7 42005435 42008931 Vra7g2204 7 42005435 42008931 ECH
Vra10g1208 10 17678282 17683937 Vra7g2204 7 42005435 42008931 ECH