Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g2202 ATGAGAACAATCAATAAGATGATGATGTTTTACTTGATTCAGCTTCCACTCATGGCTTTTCCAAACCAATCCATGTCATCGGTTTCTCCCGAGAGAAAGATGGGAAGGGGGAAGATTGAGATCAAGAGGATTGAGAACACCACCAGTCGACAAGTTACCTTCTGCAAGCGCAGAAATGGCTTGCTCAAGAAGGCATACGAGTTATCTGTGCTTTGTGATGCAGAGGTTGCTCTCATAGTCTTTTCAAACCGTGGCCGCCTCTATGAATATGCTAATAACAGTGTCAAAGCTTCAATTGAGAGATACAAGAAAGCAAGTTCAGATTCGTCTAATGGTGGATCTGCTTCTGAGGCTAATGCTCAGTTTTACCAGCAAGAAGCTGCCAAACTGCGAGTTCAAATCAGCAATCTGCAGAATCACAATAGGCAAATGATGGGTGAGGCTTTGAGCGATATGGATGCCAAGGATCTCAAAAACCTAGAGACTAAATTAGAAAAAGGAATTAGCAGAATTCGATCAAAGAAGAATGAGCTGCTGTTTGCAGAAATTGAGTACATGCAAAAGAGGGAGACAGACTTGCACAATAACAACCAGCTTCTTAGAGCAAAGATGGCAGAAAGGGAAAGGAGTGAGCATAATGTTAACGTGTTGTCTGGAAGCACAAGCTACGAATCAATGCAATCTCAGTTTGATTCTCGTGGCTTCTTCCAAGTCACTGGGTTACAACCCAATAATAACCAGTATGCTGGACAAGACCACATGTCTCTCCAATTTGTTTGA 780 0.4231 MRTINKMMMFYLIQLPLMAFPNQSMSSVSPERKMGRGKIEIKRIENTTSRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSNRGRLYEYANNSVKASIERYKKASSDSSNGGSASEANAQFYQQEAAKLRVQISNLQNHNRQMMGEALSDMDAKDLKNLETKLEKGISRIRSKKNELLFAEIEYMQKRETDLHNNNQLLRAKMAERERSEHNVNVLSGSTSYESMQSQFDSRGFFQVTGLQPNNNQYAGQDHMSLQFV* 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g2202 259 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 43 90 IPR002100 GO:0003677|GO:0046983
Vra7g2202 259 Pfam K-box region 117 204 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vra7g2202 259 SUPERFAMILY SRF-like 35 107 IPR036879 GO:0003677|GO:0046983
Vra7g2202 259 SMART madsneu2 34 93 IPR002100 GO:0003677|GO:0046983
Vra7g2202 259 PRINTS MADS domain signature 36 56 IPR002100 GO:0003677|GO:0046983
Vra7g2202 259 PRINTS MADS domain signature 56 71 IPR002100 GO:0003677|GO:0046983
Vra7g2202 259 PRINTS MADS domain signature 71 92 IPR002100 GO:0003677|GO:0046983
Vra7g2202 259 CDD MADS_MEF2_like 35 111 IPR033896 GO:0000977|GO:0045944
Vra7g2202 259 Gene3D - 46 144 IPR036879 GO:0003677|GO:0046983
Vra7g2202 259 ProSiteProfiles MADS-box domain profile. 34 94 IPR002100 GO:0003677|GO:0046983
Vra7g2202 259 ProSiteProfiles K-box domain profile. 120 210 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vra7g2202 259 PANTHER AGAMOUSB 28 253 - -
Vra7g2202 259 ProSitePatterns MADS-box domain signature. 36 90 IPR002100 GO:0003677|GO:0046983
Vra7g2202 259 Coils Coil 120 147 - -
Vra7g2202 259 PANTHER MADS BOX PROTEIN 28 253 - -
Vra7g2202 259 Coils Coil 157 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g2202 Vra-Chr7 41971020 41977067 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g2202 32 259 MADS-box Gene Family AT3G58780 64.407 6.16e-103 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vra7g2202 K-box 4.4e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g2202 K09264 - gmx:100776263 410.994
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2202 7 41971020 41977067 Vra7g2202 7 41971020 41977067 ECH
Vra7g2202 7 41971020 41977067 Vra10g1160 10 17247182 17255634 PCT