Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g2200 ATGTTTCAAATCACTTCAGAACCTCATAACAGACCACCAATGGATGGTGAGTTGACTAGCCTTGTAGGCACTGTAAAGCAAGACAAGTACAATTCCAAAAGACAAAAGGGACAAGCAGCAAAAGGCATCAAGAAAAGGATGGAGAAAGATATCGATGAAGTTGGAAAGATTGCTCATGGTTTCAAAACAAAGATTGTGGCTATAAACAGAGATAACCTATCTAATAGACAAAAGCCTGGCTGTGGAAAGGGAACACGTATTGACCGAGCAAGAATGAATATGACAAAGATAGAGACACTTGTCGGTAAAGAATACATCAGTCAGCGACCAGTTTTGATTCCATATCACAGAGGAGGGAAAAGGTTGCACATTGGATTTCAGGAATTTACAGAAGACATAGCAAGGGTGAGCTCCTCTTTTTTGTACAGAAGAATAACAAAATGCAAACTCAAATCAAAGTGGGAAAGGCTATATACAGTGGTCAAAGTATTCCCGCAGTAG 501 0.3972 MFQITSEPHNRPPMDGELTSLVGTVKQDKYNSKRQKGQAAKGIKKRMEKDIDEVGKIAHGFKTKIVAINRDNLSNRQKPGCGKGTRIDRARMNMTKIETLVGKEYISQRPVLIPYHRGGKRLHIGFQEFTEDIARVSSSFLYRRITKCKLKSKWERLYTVVKVFPQ* 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g2200 166 Gene3D - 7 101 - -
Vra7g2200 166 PANTHER SYNTAXIN 18 97 IPR045242 -
Vra7g2200 166 PANTHER SYNTAXIN OF PLANTS 122 PROTEIN 18 97 - -
Vra7g2200 166 Pfam Syntaxin 17 96 IPR006011 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g2200 Vra-Chr7 41921067 41927228 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g2200 36 95 SNARE and Associated Proteins AT5G08080 56.667 1.65e-16 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g2200 K08486 - gmx:100800991 106.686