Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g2196 ATGCTTGAGTGCAAGCGTTTGCCAGCGAACAATTATAACTGCGTTCCTTTAACACCAAGGTCTAGATTGGAAAGGCTTCTGAGGGAAAGAGAGCTAAGGAAGTCCTTCAAGAATCAACCAACTGATGAAGCAAGAGATGGGAGCAAAGAGGGAGAACAATGTTCTGGTGATTCAATAAGTGAGAATGAAATTTCAGGTGTTCATAAAGAGGAAGAAGCCACGGAAACGAATAGGCAAGATGAGAGGCCAGGCAAACAACGTTTGTTGGTGGTAGCTAACAGGTTGCCAGTTTCTGCTGTAAGAGATGGTGTGGAGTCATATCATCTTGAGATCAGTGTAGGAGGGCTAGTCAGTGCACTTCTAGGTGTAAAGGAGTTTGATACCAGATGGATTGGGTGGGCTGGTGTGAATGTGCCTGATGAGGTTGGACGGAGAGCATTGACTAAAGCTTTGGCTGAAATGCGGTGTATTCCAGTATTTCTTGATGAGGAGATAGTTAATCAGTACTATAATGGCTACTGCAACAACATCTTGTGGCCTCTATTTCATTACCTTGGGCTTCCACAAGAAGATCGACTTGCTACCACTCGTACTTTCCAATCCCAATTTGATGCATATAAGACGGCAAACCAAATCTTTGCTGATGTAGTAAATATGCATTATGAGGAAGGAGATGTTGTTTGGTGCCATGATTACCACCTAATGTTCCTTCCAAAATGTTTAAAGGAGCGCAACGACAAAATGAAAGTTGGTTGGTTTCTCCATACACCCTTTCCTTCCTCAGAAATACATAGGACTCTACCATCCAGAACAGAGCTTTTGAGATCAGTCATTGAAGCTGACCTTGTGGGATTCCATACCTATGATTATGCAAGGCATTTTGTTAGTGCTTGTACTCGTATTCTTGGGCTTGAGGGCACACCTGATGGAGTAGAAGATCGAGGGAAGCTAACCCGTGTGGCTGCGTTTCCTATTGGGATTGACTCTGAGAGATTCATTCAAGCCCTTGAACTCCCTGAAGTCCAGGCGCACATGAAAGAACTGAAAGAAAGATTTGCAGGCCGAAAGGTAATGTTGGGCGTCGATCGTCTTGATATGATAAAAGGAATTCCTCAGAAAATATTGGCATTTGAAAAGTTCCTCGAGGAGAATTCCCACTGGCGTGATAAAGTTGTCTTGCTGCAAATTGCTGTACCTACTAGAAAAGATGTTCCTGAATACCAAAGGCTTGCAAGCCAAGTGCATGAGATTGTAGGACGCATCAATGGAAGATTTGGAACACTTACAGCTGTTCCACTACACCATCTGGATCGATCACTTGACTTTCATGAATTATGTGCACTCTATGCTGTAACTGACGTTGCACTTGTTACATCTTTGAGAGATGGAATGAATCTTGTCAGCTATGAATTTGTTGCGTGCCAAGCATCCAAGAAGGGGGTTCTCATTTTAAGTGAGTTTGCTGGTGCAGCTCAGTCTCTTGGTGCTGGTGCTATCTTGGTAAATCCTTGGAACATAACAGAGGTTGCTGCTTCTATTGGTTATGCGTTGGATATGCCAGCCGATGAAAGAGAAAAACGACATCAGTTTAATTTCAGACATGTGAAGACTCACACATCACAGGAGTGGGCTGCAACTTTTGTGAGTGAACTAAATGATACCATTGTTGAAGCTCAGCTTAGGACTAGACAAGATCCTCCATTGCTTCCCAACAAAGTGACAGTTGACTGTTATAAAAAATCCAGTAACCGATTAATCATACTGGGTTTCAATGCCACTTTGACTGAACCAGTGGATGCCCTTGGACGGGCTGGTCAAATTAGAGAACTGGAACCTAAATTACACCCAAATCTGAAAGGACCTTTAAAGAAGTTATCCGATGATCCACAGACAACAATAGTACTTATCAGTGGAAGCAATCGAGCAGTCCTGGACAAAAACTTCAGTGAATTTAATATGTGGTTGGCAGCGGAAAATGGGATGTTTCTGCGACTCACTTCAAGTGAGTGGATGACAACCATGCCTGAAAATTTAAACATGGATTGGGTTGATAGCGTGAAGCATGTTTTTGAGTATTTTACTGAAAGGACTCCCCGGTCTCATTTTGAGCTTAGGGAGACTTCAATAGTATGGAATTACAAGTACGCAGATTTTGAATTTGGAAAGATTCAAGCAAGAGATTTGCTTCAGCATCTGTGGACAGGACCAATATCAAATGCATCTCTTGATGTTGTCCAAGGTGGTCGATCAGTTGAGGTGCGCACAGTTGGCGTGTCAAAGGGAGCAGCTATTGATCGTATCCTTGGAGAGATAGTTCATAACAAAGGCATGACGGCACCGATTGACTATGTCCTATGCATTGGACACTTTCTAGCCAAGGACGAAGATGTGTATAAATTTTTTGAGCCGGAGCTTCCTTGTGAATCACCTTCAGTACCAAGAGCTATGCTATCCAAATCCAAGTCATACAGACCATCATCTTTGCCAAAATTTGCAGCCAATAAAGCCGGGACAAAGGCTGCTCAGTACAAGAAACAACGTTCGTTGTCAAGCATAGAAAAGAGAGAAATTGAACTGAGAGCAACATATCGTGATAGAATATCACAGCATGAAGGTTCCTCAGTGCTTGATCTAAAAGGTGATAATTACTTCTCTTGTGTTGTTGGACGGAAAAGATCAAGTGCACGTTACCATCTTAAAACCTCAGATGATGTTGTCAACCTCTTAAGTGACTTGGCAGAACATTCTTAA 2751 0.426 MLECKRLPANNYNCVPLTPRSRLERLLRERELRKSFKNQPTDEARDGSKEGEQCSGDSISENEISGVHKEEEATETNRQDERPGKQRLLVVANRLPVSAVRDGVESYHLEISVGGLVSALLGVKEFDTRWIGWAGVNVPDEVGRRALTKALAEMRCIPVFLDEEIVNQYYNGYCNNILWPLFHYLGLPQEDRLATTRTFQSQFDAYKTANQIFADVVNMHYEEGDVVWCHDYHLMFLPKCLKERNDKMKVGWFLHTPFPSSEIHRTLPSRTELLRSVIEADLVGFHTYDYARHFVSACTRILGLEGTPDGVEDRGKLTRVAAFPIGIDSERFIQALELPEVQAHMKELKERFAGRKVMLGVDRLDMIKGIPQKILAFEKFLEENSHWRDKVVLLQIAVPTRKDVPEYQRLASQVHEIVGRINGRFGTLTAVPLHHLDRSLDFHELCALYAVTDVALVTSLRDGMNLVSYEFVACQASKKGVLILSEFAGAAQSLGAGAILVNPWNITEVAASIGYALDMPADEREKRHQFNFRHVKTHTSQEWAATFVSELNDTIVEAQLRTRQDPPLLPNKVTVDCYKKSSNRLIILGFNATLTEPVDALGRAGQIRELEPKLHPNLKGPLKKLSDDPQTTIVLISGSNRAVLDKNFSEFNMWLAAENGMFLRLTSSEWMTTMPENLNMDWVDSVKHVFEYFTERTPRSHFELRETSIVWNYKYADFEFGKIQARDLLQHLWTGPISNASLDVVQGGRSVEVRTVGVSKGAAIDRILGEIVHNKGMTAPIDYVLCIGHFLAKDEDVYKFFEPELPCESPSVPRAMLSKSKSYRPSSLPKFAANKAGTKAAQYKKQRSLSSIEKREIELRATYRDRISQHEGSSVLDLKGDNYFSCVVGRKRSSARYHLKTSDDVVNLLSDLAEHS* 917
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g2196 916 Gene3D - 724 916 IPR023214 -
Vra7g2196 916 CDD GT20_TPS 87 552 IPR001830 GO:0003824|GO:0005992
Vra7g2196 916 TIGRFAM trehalose_OtsA: alpha,alpha-trehalose-phosphate synthase (UDP-forming) 87 552 IPR012766 GO:0003825|GO:0005992
Vra7g2196 916 Pfam Trehalose-phosphatase 614 828 IPR003337 GO:0003824|GO:0005992
Vra7g2196 916 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 86 555 - -
Vra7g2196 916 MobiDBLite consensus disorder prediction 31 52 - -
Vra7g2196 916 Gene3D Glycogen Phosphorylase B; 78 333 - -
Vra7g2196 916 Pfam Glycosyltransferase family 20 87 552 IPR001830 GO:0003824|GO:0005992
Vra7g2196 916 SUPERFAMILY HAD-like 585 912 IPR036412 -
Vra7g2196 916 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 51 912 - -
Vra7g2196 916 Gene3D Glycogen Phosphorylase B; 334 537 - -
Vra7g2196 916 CDD HAD_TPP 585 804 - -
Vra7g2196 916 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 51 912 IPR001830 GO:0003824|GO:0005992
Vra7g2196 916 MobiDBLite consensus disorder prediction 31 85 - -
Vra7g2196 916 MobiDBLite consensus disorder prediction 63 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g2196 Vra-Chr7 41851776 41860672 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g2196 7 914 Trehalose Biosynthesis Gene Families AT1G78580 72.999 0.0 1370
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g2196 K16055 - gmx:100816642 1625.53