Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g2164 ATGACCTCTGCTCACAACCTTACTGATAATGAAGATGAAGGGCAGCACCAGTCAGAATCCCAAGTGCAGTCCCCGTCTGCAAATGGAATTTCTGATTCCGCTATTAGAACCCAGAATGTCAATGTACAGTACGCAACACCTGGCCAGCTTGGAGCTGGGCATGCAATGGTGCCACCTGTGTATCCATATCCAGACCCTTATTATAGAAGCATCTTTGCTCCCTATGATACTCAACCTTATCCCCCACAAGCCTATGGTGGACAGCCAATGGTCCATCTTCAGTTAATGGGAATTCAGCAAGCTGGTGTTCCTCTGCCAACAGATGCAGTTGAGGAGCCTGTGTTTGTCAATGCAAAACAATATCACGGTATATTGAGACGTAGACAATCCCGTGCTAAAGCTGAATCAGAAAATAAAGCTATAAGAAATAGGAAGCCATACTTGCATGAATCTCGACACATGCACGCACTGAGAAGACCGAGAGGATGTGGTGGTCGGTTTCTGAATTCAAAGAAAGAAGAGAACCAGCATAATGATGTAGCATCAGCAGACAAATCACAATCCAATATCAATCTCAATTCTGATAAAAATGATCAAACGTCATCAGATAGGACATCCTGA 621 0.4412 MTSAHNLTDNEDEGQHQSESQVQSPSANGISDSAIRTQNVNVQYATPGQLGAGHAMVPPVYPYPDPYYRSIFAPYDTQPYPPQAYGGQPMVHLQLMGIQQAGVPLPTDAVEEPVFVNAKQYHGILRRRQSRAKAESENKAIRNRKPYLHESRHMHALRRPRGCGGRFLNSKKEENQHNDVASADKSQSNINLNSDKNDQTSSDRTS* 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g2164 206 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-7 2 189 - -
Vra7g2164 206 MobiDBLite consensus disorder prediction 17 31 - -
Vra7g2164 206 Gene3D - 110 171 - -
Vra7g2164 206 PRINTS CCAAT-binding transcription factor subunit B signature 113 135 IPR001289 GO:0003700|GO:0006355
Vra7g2164 206 PRINTS CCAAT-binding transcription factor subunit B signature 144 167 IPR001289 GO:0003700|GO:0006355
Vra7g2164 206 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 112 167 IPR001289 GO:0003700|GO:0006355
Vra7g2164 206 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 2 189 IPR001289 GO:0003700|GO:0006355
Vra7g2164 206 MobiDBLite consensus disorder prediction 129 147 - -
Vra7g2164 206 MobiDBLite consensus disorder prediction 1 31 - -
Vra7g2164 206 MobiDBLite consensus disorder prediction 129 206 - -
Vra7g2164 206 ProSiteProfiles NF-YA/HAP2 family profile. 110 170 IPR001289 GO:0003700|GO:0006355
Vra7g2164 206 SMART cbf3 109 170 IPR001289 GO:0003700|GO:0006355
Vra7g2164 206 MobiDBLite consensus disorder prediction 166 180 - -
Vra7g2164 206 MobiDBLite consensus disorder prediction 181 200 - -
Vra7g2164 206 ProSitePatterns NF-YA/HAP2 subunit signature. 115 135 IPR018362 GO:0003677|GO:0016602
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g2164 Vra-Chr7 41479521 41484752 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g2164 2 206 CCAAT-HAP2 Transcription Factor Family AT1G30500 57.488 7.89e-73 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Vra7g2164 CBFB_NFYA 3.1e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g2164 K08064 - gmx:100499754 383.645