Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g2158 ATGGGTAATTGCTGGTGTAGATGGGAGTCATCAGATTATAGAGTCTCATCCAATGTAAAGTCAGAACAAAACCAGGTAACGAAGCAAAGGAATGATCATGATAGTAAGTTGCCATCAAACCCTGAGGAAGTAGAAGACCTACGGCGTGATTCGGCTGCAAATCCATTGATTGTATTCACTTACGATGAGTTGAAGATAATCACTGCAAATTTTAGGCCAGATCGTGTGTTGGGGGGAGGAGGATTTGGAAGTGTGTACAAAGGGTTCATTTCTGAGGAGTTAAGGCAGGGTCTTCCTACTCTTGCTGTAGCTGTTAAGGTTCATGATGGTGACAATAGTCATCAAGGCCACAGAGAATGGCTGGCAGAAGTGATATTTTTGGGGCAGCTTTCACACCCAAATCTAGTGAAATTAGTTGGATACTGCTGCGAGGATGAACATAGAGTACTGATATATGAGTACATGTCCCGGGGAAGTGTGGAACACAACTTGTTCTCAAAAATCTTGCTTCCAATGCCATGGTCCATAAGAATGAAGATTGCATTTGGTGCAGCTAAGGGACTTGCATTTCTCCATGAAGCAGAGAAACCTGTCATCTATCGTGATTTCAAGACATCAAATATTTTATTGGACCAGGACTACAATGCAAAACTTTCTGATTTTGGCCTTGCCAAGGATGGACCAGTTGGAGACAAATCACATGTTTCTACTAGAGTAATGGGAACATATGGTTATGCAGCACCTGAATACATAATGACAGGTCATCTGACTCCTAGAAGTGATGTTTATAGTTTTGGGGTTGTTCTGCTTGAACTTCTGACAGGGAGAAAATCTTTAGACAAGTTAAGACCTGCTAGAGAGCAGAATCTGACAGAATGGGCTGTTCCTTTGCTGAAGGAAAAGAAGAAATTTCTAAACATAATAGATCCAAGGTTGGATGGTGATTATCCAATTAAAGCAGTTCACAAGGCTGCAATGCTTGCATATCATTGCTTGAACCGCAATCCAAAAGCAAGGCCTCTGATGAGAGATATTGTGGACTCATTGGAGCCTTTGCAGGCATACACAGAGGTTCCTGTTGGAAAAACAGTGACCATAATCAGTGAGGTTCCTGAATCTGATTTGAAAATGAAAGATGCAAAATGA 1146 0.4154 MGNCWCRWESSDYRVSSNVKSEQNQVTKQRNDHDSKLPSNPEEVEDLRRDSAANPLIVFTYDELKIITANFRPDRVLGGGGFGSVYKGFISEELRQGLPTLAVAVKVHDGDNSHQGHREWLAEVIFLGQLSHPNLVKLVGYCCEDEHRVLIYEYMSRGSVEHNLFSKILLPMPWSIRMKIAFGAAKGLAFLHEAEKPVIYRDFKTSNILLDQDYNAKLSDFGLAKDGPVGDKSHVSTRVMGTYGYAAPEYIMTGHLTPRSDVYSFGVVLLELLTGRKSLDKLRPAREQNLTEWAVPLLKEKKKFLNIIDPRLDGDYPIKAVHKAAMLAYHCLNRNPKARPLMRDIVDSLEPLQAYTEVPVGKTVTIISEVPESDLKMKDAK* 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g2158 381 ProSitePatterns Protein kinases ATP-binding region signature. 77 106 IPR017441 GO:0005524
Vra7g2158 381 ProSitePatterns Serine/Threonine protein kinases active-site signature. 198 210 IPR008271 GO:0004672|GO:0006468
Vra7g2158 381 ProSiteProfiles Protein kinase domain profile. 71 353 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra7g2158 381 Pfam Protein tyrosine and serine/threonine kinase 74 349 IPR001245 GO:0004672|GO:0006468
Vra7g2158 381 Gene3D Phosphorylase Kinase; domain 1 32 154 - -
Vra7g2158 381 Gene3D Transferase(Phosphotransferase) domain 1 155 364 - -
Vra7g2158 381 SUPERFAMILY Protein kinase-like (PK-like) 44 349 IPR011009 -
Vra7g2158 381 MobiDBLite consensus disorder prediction 17 47 - -
Vra7g2158 381 CDD STKc_IRAK 77 352 - -
Vra7g2158 381 MobiDBLite consensus disorder prediction 26 47 - -
Vra7g2158 381 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL16-RELATED 10 362 - -
Vra7g2158 381 PANTHER OS01G0588500 PROTEIN-RELATED 10 362 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g2158 Vra-Chr7 41357528 41363526 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g2158 14 349 Glycoside Hydrolase AT3G07070 47.977 5.70e-105 313
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vra7g2158 PK_Tyr_Ser-Thr 5.3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g2158 - - gmx:100775722 732.25