Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g2138 ATGTTGGACGCCATGGATGAACGTCAAACAAAAAAGTATGCATTCCATTATCCCAACTATATTGTTGGGGACAAAGTGTACAACTTTATCAAACTCATCAATACGGGCTCCATTTTTGTTCTTCTGATCTTTTTGGTAGCATCAAATCCAAGCTCAGCAACGCCCTCTCCGTCTCCTTCTCCCATCATTTCCCCCACCAACAATTCTACATGCCCAGTGCCCATGAATTATGTTCAAACAGTCCCTTGGAACTTCTCTTCCTGCCAAAACTTCCAACCCTTGTCAACCCAAAACCAAACAAGCACAAGTTCTTGTTGCAAAACCCTCCTATCCCTCTTTGGGGTAGCACTTGCACAAAACCTCAAGGAAAACTCCCTTTTTCAACTACCCAATCTCCCTACATCTATCTCTTGCCTCCAACACTTCCAATCCAATCTCACATCGCTCTCACTTCCCAACAACCTTGTCTCCTCCTGCTTTGATCCACAACAATTTGTCATCACTCCCAATATCTGTGCTCGGATTCAAAACATGGAAGATTGGCTCACCAGGCTTGGCTCTACACCACAGCTCGACACTGCGTGTAAACCAGACCTTACTGATAGAAACCAATGCAGAGAGTGCGTGGCTGAGGGGGACAAGGTTCAGCAGAAGCTTAGTGCCATTGATGGTAATGAATCACATTCCCAAGATTGCTTTTACTTCACAGCACTTTACATGGCTGGAGTGGCCAATCAGTATGGCCCTGAGAGCAGAGGTGCTTTGTCTTGCGTTTTGATTTTGTTGCTTAATTCACAAGTTGATTCAAGGGATGGCCATCGTGCTCTTAGGTTTGGTTTTTTTGTAGCTTCACTTGCAGTCCTGGTAATCCTGTTGTTAGGAGTAGGGTTGTATTTTTGGTATACCAAGAGAAGAAGTGTCGAAAATTTGCTCGCCTATGCTGATCTACAGGAAGAAAGGTTCAGGCTAAGACTGAGACCAAATACAGTGTTAACTTGGTTTGAAATTGAGAGTCTTGTGAGGGCCACCAATAATTTTTCACCTAAGAATTTCATTGGTAGAGGTGGGTTTGGGATGGTTTACAAGGGCATTCTACCTGATGGCACAATGGTTGCGGTGAAAAGGCTTGAAGAATCCGATTCTCAAGGAGATACTCTGTTCTACAGTGAGGTTGAGATTGTTAGCAACTTGAAGCACCGTAATCTGGTGCCACTAATAGGGTGTTGTTTGGTTGATGAGGGTCACAATCTTGAGTACAGAGGAAGGTATCTAGTTCATGAATATATGCCAAATGGAAGTCTTCAAGACCATCTTTTTCCAACCAAATTAGAGAATCAATATACAACGAAATCCCTGACTTGGACTCAAAGAAAAAGCATAATCTTGGATGTGGCAAATGCATTGGTTTATTTGCACTTTGGAGTTAAACCTGCAGTGTATCACAGAGATATTAAAGCCACCAATATACTACTTGATGCAGATATGAGGGCGAGGGTTGGAGATTTTGGGCTTGTCAAACGGAGTAGTGAAAGTACGTCTCATCTAAATACAATAGTTGCTGGAACTCGTGGATATGTAGCACCTGAATATGCACTCTATGGTCAACTAACTGATAAGAGTGACGTCTACAGCTTTGGTGTGGTTGTTCTTGAGATAATGTGTGGAAGAAAAGCCCTTGAGTTGTCCTCATCAGGGACACCGGTTTTCTTGATCACAGATTGGGTTTGGTCATTAATGAAATCTGGAAACATAGGAGAGGCTTTGGATGCTTCTATGTCTGGAGACGGAAATCATGCTACAAGCATAATGGAGAGATTTTTACTGGTTGGAATTCTTTCTTCTCATGTAGTAGTTGCTTCAAGGCCAACAATTTTGAATGCCTTGAAGATGTTAGAAGGGGATATTGAAATCCCACCAATTCCAGATAGGCCACTGATGCACGGGCACTGTGTTATGTACAATGGAGATTGCTCTGGTATGAGCTCTGGATGTGGGTTTGTGAGCTCATGA 2010 0.4294 MLDAMDERQTKKYAFHYPNYIVGDKVYNFIKLINTGSIFVLLIFLVASNPSSATPSPSPSPIISPTNNSTCPVPMNYVQTVPWNFSSCQNFQPLSTQNQTSTSSCCKTLLSLFGVALAQNLKENSLFQLPNLPTSISCLQHFQSNLTSLSLPNNLVSSCFDPQQFVITPNICARIQNMEDWLTRLGSTPQLDTACKPDLTDRNQCRECVAEGDKVQQKLSAIDGNESHSQDCFYFTALYMAGVANQYGPESRGALSCVLILLLNSQVDSRDGHRALRFGFFVASLAVLVILLLGVGLYFWYTKRRSVENLLAYADLQEERFRLRLRPNTVLTWFEIESLVRATNNFSPKNFIGRGGFGMVYKGILPDGTMVAVKRLEESDSQGDTLFYSEVEIVSNLKHRNLVPLIGCCLVDEGHNLEYRGRYLVHEYMPNGSLQDHLFPTKLENQYTTKSLTWTQRKSIILDVANALVYLHFGVKPAVYHRDIKATNILLDADMRARVGDFGLVKRSSESTSHLNTIVAGTRGYVAPEYALYGQLTDKSDVYSFGVVVLEIMCGRKALELSSSGTPVFLITDWVWSLMKSGNIGEALDASMSGDGNHATSIMERFLLVGILSSHVVVASRPTILNALKMLEGDIEIPPIPDRPLMHGHCVMYNGDCSGMSSGCGFVSS* 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g2138 669 ProSiteProfiles Protein kinase domain profile. 346 646 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra7g2138 669 PANTHER RECEPTOR-LIKE PROTEIN KINASE-RELATED 64 648 - -
Vra7g2138 669 Gene3D Transferase(Phosphotransferase) domain 1 429 637 - -
Vra7g2138 669 Pfam SPARK 67 233 IPR043891 -
Vra7g2138 669 SMART serkin_6 346 631 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra7g2138 669 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 64 648 - -
Vra7g2138 669 ProSitePatterns Protein kinases ATP-binding region signature. 352 374 IPR017441 GO:0005524
Vra7g2138 669 ProSitePatterns Serine/Threonine protein kinases active-site signature. 479 491 IPR008271 GO:0004672|GO:0006468
Vra7g2138 669 Gene3D Phosphorylase Kinase; domain 1 311 428 - -
Vra7g2138 669 SUPERFAMILY Protein kinase-like (PK-like) 327 631 IPR011009 -
Vra7g2138 669 Pfam Protein kinase domain 349 563 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g2138 Vra-Chr7 41074343 41078680 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g2138 63 649 Receptor kinase-like Gene Family AT1G11050 56.397 0.0 636
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Vra7g2138 Pkinase 2.8e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g2138 - - vra:106765729 1277.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2138 7 41074343 41078680 Vra7g2138 7 41074343 41078680 ECH
Vra10g1591 10 20535138 20538226 Vra7g2138 7 41074343 41078680 PCT