Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g2114 ATGGCAGCGGCCATAGGTATGTACAACAACAGCAACATCGTACCGGAATTCCTAGATCCGTACAGTGAGGAGCTGATGAAAGCACTTGAGCCTTTTGTGAAAAGTGATTATTTTTCTGTCTCTTCTGATTCCGCTTCTTCCTCTCGTCAATCGCACGCTCCTTCTTCTTCCTCTTCTCTTTCGTTTTCTTCTCCATCTTCTTCTTATTCTCTCATTTCATCTACTTCGTATCCCTCCCCCAACCAAATCAAGCTCAACAAACTCACCCCAGACCAAATCCTCCAGATTCAAGCACAGGTTGGGCTTCAGCAGCACATGGGTTATTCGACTCAACGTGAAAACCAACCCCAGCTGGGCCCAAAACGTGTTCCCATGAAGCACGGTGGCGCGGCGGCGAAAGCCGCGAAACTGTACCGCGGGGTGAGGCAACGGCATTGGGGGAAGTGGGTCGCCGAGATCAGACTCCCGAAGAACCGGACGCGCCTATGGCTGGGAACATTCGACACAGGAGAAGAAGCGGCGTTGGCTTACGACAACGCAGCGTTTAAGCTCAGAGGCGAGTTCGCGCGCCTCAACTTCCCTCATCTGCGACACCAGGGAGCGTTCGTATTCGGTGAATTCGGAGATTACAAGCCTCTACCTTCTTCCGTCGACTCCAAGCTCCAAGCTATTTGCGAAAGCTTGGCGAAACAAGAACAACAAAAAACGAGTTGCTCTGTCGAAGACGTGAAGCCGGAGGTACACACTGCTGCTGAGCTGGCACAGGTGGAGTCTGACGTGGCGCAATCCAACGTTTGTCCCGAGTTCGACAATTTTAAGGTAGAAAACGGGAACGAGAACCCAATGTTATCATCGCCGGTGTCTGGCGAGTCGTCTTCGCCTGAATCGGGTGTGACTTTCTTGGATTTTTCGGACTTGGCACATTCTAATTATGAGTGGGATGAAATGGAGAGCTTTAGGTTGGAGAAGTACCCTTCGGTGGAGATTGATTGGGCATCTATATGA 1005 0.5095 MAAAIGMYNNSNIVPEFLDPYSEELMKALEPFVKSDYFSVSSDSASSSRQSHAPSSSSSLSFSSPSSSYSLISSTSYPSPNQIKLNKLTPDQILQIQAQVGLQQHMGYSTQRENQPQLGPKRVPMKHGGAAAKAAKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTGEEAALAYDNAAFKLRGEFARLNFPHLRHQGAFVFGEFGDYKPLPSSVDSKLQAICESLAKQEQQKTSCSVEDVKPEVHTAAELAQVESDVAQSNVCPEFDNFKVENGNENPMLSSPVSGESSSPESGVTFLDFSDLAHSNYEWDEMESFRLEKYPSVEIDWASI* 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g2114 334 CDD AP2 138 196 IPR001471 GO:0003700|GO:0006355
Vra7g2114 334 SUPERFAMILY DNA-binding domain 137 195 IPR016177 GO:0003677
Vra7g2114 334 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF060-LIKE 1 334 - -
Vra7g2114 334 ProSiteProfiles AP2/ERF domain profile. 137 194 IPR001471 GO:0003700|GO:0006355
Vra7g2114 334 Gene3D AP2/ERF domain 137 195 IPR036955 GO:0003700|GO:0006355
Vra7g2114 334 PRINTS Ethylene responsive element binding protein signature 138 149 IPR001471 GO:0003700|GO:0006355
Vra7g2114 334 PRINTS Ethylene responsive element binding protein signature 160 176 IPR001471 GO:0003700|GO:0006355
Vra7g2114 334 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 1 334 - -
Vra7g2114 334 SMART rav1_2 137 200 IPR001471 GO:0003700|GO:0006355
Vra7g2114 334 MobiDBLite consensus disorder prediction 43 65 - -
Vra7g2114 334 Pfam AP2 domain 138 187 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g2114 Vra-Chr7 40768999 40770646 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g2114 3 334 AP2-EREBP Transcription Factor Family AT4G39780 46.866 1.16e-78 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vra7g2114 AP2 2.3e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g2114 K09286 - gmx:100797648 439.499