Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g2112 ATGACTCAGCAGAATGTGGTACTGTCCAAGACAAAATCCGGGATCAACAGGGACCTAACAGTTGCGCAAAAGCCACCGGCGGCGCCGGGAGGATACATTCCCATTCCGAGGAGGAGGGTTTTGAAGAACCTTGAGATCAATGGAGGACAAAGAATCAATGCATGGGTTGATTCCATGAGAGCCTCTTCTCCCACCCATGCCAAATCAACCTCTTCCTTAGCTGAAGAACACAGCTCTTGGATTCTTCGCCACCCTTCGGCATTAGACATGTTTGAGCAAATTATGGATGCATCCAGGGGAAAGCAAATCGTCATGTTCCTGGACTATGATGGTACTTTGTCACCTATTGTTGATGATCCAGACCGTGCTTTCATGTCGGACTCGATGAGGAAAACAGTGAGGAAACTTGCAAGGTGTTTTCCCACTGCTATAGTTACAGGCAGATGCAGAGACAAGGTTTACAATTTTGTGCGCTTGGCCGAGCTATATTATGCTGGAAGCCATGGCATGGATATCCAAGGGCCAACAAGAGACTCCAAATACAGCAACAAAGACAAAGGAGAGCCAGTTCTTTTCCAACCTGCCAGTGAATTTCTTCCCATGATAGATGAGGTGTACAATCAATTAGTTGAGAAAATGAAATCAATCCCTGGAGCAAGGGTGGAGAACAACAAGTTCTGCGCCTCTGTTCATTTTCGCTGCGTTGATGAAAAGAAATGGAGTGAACTGGCACAGGAAGTGAGATCAGTATTAAAAGAGTACCCGAAGCTTCGTCTTAACCAAGGAAGAAAGGTATTAGAGATTCGTCCATCCATTAAATGGGACAAAGGGAAAGCACTGGAATTTTTGTTAGAGTCACTTGGATTTGCCAACTGTAATGATGTCTTTCCTGTTTACATTGGAGATGATAAAACCGATGAAGATGCATTCAAGAAACTTAGAGACAGAGGACAAGGTTTTGGGATTCTTGTCTCGAAATTCCCAAAAGACACTACTGCATCATACTCTTTACAAGAACCTAACGAGGTGATGGATTTCCTTCAACGATTGGTGGAATGGAAACAAGTATCCCTTCGTCTCCGAGCACGTTCCCGTGTGTAA 1101 0.446 MTQQNVVLSKTKSGINRDLTVAQKPPAAPGGYIPIPRRRVLKNLEINGGQRINAWVDSMRASSPTHAKSTSSLAEEHSSWILRHPSALDMFEQIMDASRGKQIVMFLDYDGTLSPIVDDPDRAFMSDSMRKTVRKLARCFPTAIVTGRCRDKVYNFVRLAELYYAGSHGMDIQGPTRDSKYSNKDKGEPVLFQPASEFLPMIDEVYNQLVEKMKSIPGARVENNKFCASVHFRCVDEKKWSELAQEVRSVLKEYPKLRLNQGRKVLEIRPSIKWDKGKALEFLLESLGFANCNDVFPVYIGDDKTDEDAFKKLRDRGQGFGILVSKFPKDTTASYSLQEPNEVMDFLQRLVEWKQVSLRLRARSRV* 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g2112 366 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 105 316 IPR006379 -
Vra7g2112 366 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 1 363 IPR044651 GO:0004805|GO:0005992
Vra7g2112 366 SUPERFAMILY HAD-like 104 353 IPR036412 -
Vra7g2112 366 Pfam Trehalose-phosphatase 106 340 IPR003337 GO:0003824|GO:0005992
Vra7g2112 366 CDD HAD_TPP 104 344 - -
Vra7g2112 366 Gene3D - 203 362 IPR023214 -
Vra7g2112 366 Gene3D - 103 190 IPR023214 -
Vra7g2112 366 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 1 363 - -
Vra7g2112 366 TIGRFAM T6PP: trehalose-phosphatase 101 351 IPR003337 GO:0003824|GO:0005992
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g2112 Vra-Chr7 40728660 40731687 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g2112 94 357 Trehalose Biosynthesis Gene Families AT1G06410 24.735 4.24e-08 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g2112 K01087 - gmx:100788735 674.47