Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g2091 ATGCCAAACACCACTCAGCAATTCCCAATCAACAACATCAACTTCAACCACGATTCCCTGCATGTTTCCCTTCGCAACCTCTCCCAACTCAGCACACGAATGGATTCGCTTCAGACCTTTGTCTCCCAATCCATTCAATCTCACACTCTCCTCACACACCACCAAATGAACATAGTATCCAACGAGATCCTAACCGCAATTCGCCACCTCATCACCAACGGCGCAGCCTTAGTCGCCGCGTCGGAGGACGTGCTTTCCCTTTCGGAGACTCCCACGTCGGAATACTCTCCCAACCGAAATACCAACCAAACAAACGTGGTGGAGCTGGACGCCGTGGAACTCCTGGCGCAGCACCTCCACTTCTGCGAGGTGTGCGGGAAGGGCTTCACGCGCGACGCCAACCTTAGGATGCACATGCGCGCCCACGGGGACGAGTTCAAGACTGCGGACGCGCTCGCGAGCAGGGCGCGTGGCGATACGCGTTGGAAAACGACGCGGTTCTCGTGCCCCTTCGAAGGATGCAACCGCAACAAGATGCATAAAAAGTTCAGGCCGTTGAAGTCGGTGTTCTGTCTGAGGAACCACTTCAAGAGGAGCCACTGCCCCAAAACGATGTCGTGCGAGCGGTGTCGGAAGAAGAGCTTCGCGGTGCTCTCGGACTTGAGGAGTCACATGAAGCAATGTCGGGGAGAGGCCACATGGAAGTGCTCGTGCGGAACCACGTTTTCGCGGAAGGACAAGCTGTTCGGACACGTGGCGCTGTTCGAGGGGCATTTGCCTATGCTTGAAGAGGACAAGGAGACTTCGGCGGGGCCGGCGGCGACGGCGGTGGAAGGGTTGGTGAAGGAAAGTGACGGTGGTTTGAATGGGTTACCTGAAGGGTTCTTTGATGGATTGGATGAATTTGGATTTGGTTCAACTGAAAGCACATCTTCACCGGAAGAAACTTCGTCTTGGGGTTTCCCACAAATGGAAACTCATTTCTAA 987 0.5491 MPNTTQQFPINNINFNHDSLHVSLRNLSQLSTRMDSLQTFVSQSIQSHTLLTHHQMNIVSNEILTAIRHLITNGAALVAASEDVLSLSETPTSEYSPNRNTNQTNVVELDAVELLAQHLHFCEVCGKGFTRDANLRMHMRAHGDEFKTADALASRARGDTRWKTTRFSCPFEGCNRNKMHKKFRPLKSVFCLRNHFKRSHCPKTMSCERCRKKSFAVLSDLRSHMKQCRGEATWKCSCGTTFSRKDKLFGHVALFEGHLPMLEEDKETSAGPAATAVEGLVKESDGGLNGLPEGFFDGLDEFGFGSTESTSSPEETSSWGFPQMETHF* 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g2091 328 SMART c2h2final6 167 200 IPR013087 -
Vra7g2091 328 SMART c2h2final6 120 142 IPR013087 -
Vra7g2091 328 ProSiteProfiles Zinc finger C2H2 type domain profile. 120 147 IPR013087 -
Vra7g2091 328 Gene3D Classic Zinc Finger 202 259 - -
Vra7g2091 328 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 98 313 IPR044300 GO:0010044|GO:0010447
Vra7g2091 328 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 19 93 IPR044300 GO:0010044|GO:0010447
Vra7g2091 328 ProSitePatterns Zinc finger C2H2 type domain signature. 122 142 IPR013087 -
Vra7g2091 328 Pfam Zinc-finger of C2H2 type 121 140 - -
Vra7g2091 328 Gene3D Classic Zinc Finger 120 142 - -
Vra7g2091 328 PANTHER ZINC FINGER PROTEIN STOP1 HOMOLOG 98 313 - -
Vra7g2091 328 PANTHER ZINC FINGER PROTEIN STOP1 HOMOLOG 19 93 - -
Vra7g2091 328 MobiDBLite consensus disorder prediction 305 328 - -
Vra7g2091 328 SUPERFAMILY beta-beta-alpha zinc fingers 118 145 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g2091 Vra-Chr7 40507182 40508481 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g2091 106 320 C2H2 Transcription Factor Family AT1G34370 49.315 6.26e-69 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vra7g2091 zf-met 0.0014 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g2091 - - pvu:PHAVU_002G256900g 537.724