Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g2082 ATGGAGGAGGAAGAGCACGAGGTGTACGGAGGAGAGATCCCCGACGAGGGTGAGATGGAAGGAGACGTCGATATGTCCGCCGCCGACGATGACGCTGCCGTCAAGGAGCTCGACGAGATGAAGCGCCGATTGAAGGAGATGGAGGAGGAAGCCGCAGCGCTTCGCGAGATGCAAGCCAAGGTCGAGAAGGAAATTGGCAGCGTTCAAGATCCTGCTAATGCAGCTGCTTCTCAAGCAAACAAGGAGGAGGCAGATTCTCGGTCTGTTTTTGTTGGCAATGTTGATTATGCATGCACACCAGAAGAAGTGCAGCAACACTTTCAATCCTGTGGTACTGTGAACAGGGTCACTATCCTGACAGACAAGTTTGGCCAGCCTAAAGGTTTTGCTTATGTGGAATTTGTTGAAGTTGAAGCTGTTCAAGAGGCTCTCGTCTTGAATGAATCTGAACTGCATGGTAGGCAACTGAAGGTTTTACCTAAGAGGACCAATGTCCCTGGAATGAAACAACATCGTCCTAGACGGTTTAATCCTTACATGGCATACGGCTTCAGGAGGCCATATACTCCTCCTTACTTTTACTCCCCTTATGGATATGGGAAGGTTCCTAGGTTTAGAAGGCCAAATCGTTACATGCCGTACTACTAG 648 0.4938 MEEEEHEVYGGEIPDEGEMEGDVDMSAADDDAAVKELDEMKRRLKEMEEEAAALREMQAKVEKEIGSVQDPANAAASQANKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEVEAVQEALVLNESELHGRQLKVLPKRTNVPGMKQHRPRRFNPYMAYGFRRPYTPPYFYSPYGYGKVPRFRRPNRYMPYY* 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g2082 215 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 89 157 IPR000504 GO:0003723
Vra7g2082 215 SMART rrm1_1 88 159 IPR000504 GO:0003723
Vra7g2082 215 Gene3D - 25 159 IPR012677 -
Vra7g2082 215 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 1 213 - -
Vra7g2082 215 CDD RRM_II_PABPs 88 159 - -
Vra7g2082 215 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 87 163 IPR000504 GO:0003723
Vra7g2082 215 PANTHER - 1 213 - -
Vra7g2082 215 Coils Coil 30 64 - -
Vra7g2082 215 MobiDBLite consensus disorder prediction 64 84 - -
Vra7g2082 215 MobiDBLite consensus disorder prediction 1 23 - -
Vra7g2082 215 SUPERFAMILY RNA-binding domain, RBD 77 183 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g2082 Vra-Chr7 40431863 40437209 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g2082 84 158 Eukaryotic Initiation Factors Gene Family AT2G36660 34.211 3.48e-09 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g2082 K14396 - gmx:100789721 386.726