Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g2079 ATGGAACGGTATGAGATAATCAAAGATATTGGGTCAGGGAACTTTGGTGTGGCAAAGCTCGTCAAGGAAAAATGGACTGGTGAATTATACGCTGTCAAGTTCATTGAGAGAGGCTTCAAGATTGATGAGCACGTCCAAAGAGAGATTATAAATCACAGGTCTTTGAAGCACCCCAATATCATTAGATTCAAAGAGGTGTTGCTTACTCCAACTCATCTTGCAATAGTCATGGAATATGCTTCCGGGGGAGAACTGTTTGAAAGAATATGCAGTGCTGGGAGATTCAGCGAGGACGAGGCAAGATATTTCTTTCAGCAATTGATTTCTGGAGTCAGCTATTGCCATTCAATGGAAATTTGCCATAGGGATCTTAAGCTGGAAAACACACTTCTAGATGGAAGCTCAGCACCACGACTTAAAATCTGCGACTTTGGTTACTCAAAGTCATCAGTTCTGCACTCCCAGCCAAAATCTACTGTAGGAACCCCTGCCTATATTGCACCAGAGGTTTTGTCAAGAAAAGAATATGATGGGAAGGTTGCAGATGTTTGGTCTTGTGGGGTGACCTTATATGTGATGTTGGTTGGTGCATATCCTTTTGAAGACCCAGAAGACCCAAGAAACTTCAGAAAAACACTTCAGCGAATTCTTAGCGTCCACTATTCTATTCCAGACTATGTACGTATCAGTAAAGAGTGTAGACACCTTTTGTCTCGAATATTTGTGGCGAACCCAGAAAAGAGAATTACCATACCAGAGATAAAAAAGCACCCTTGGTTCCTGAAGAACTTACCAGTAGAATTTATGGAGGAGGGAGAAGGAGTGTTGCAAAATGACATGAAGGAATCATGTGAGACTCAAAGCATTGAAGAAATACTGTCCATAATTCAAGAGGCTAGAAAACCGGGTGAGGGCCCAAGAGTTGGTGAGCAATTTGTTGGGGGCAGCATGGACCTTGATGACATTGATGCAGATGCTGACATCGATGATATTGAGACAAGCGGTGATTTTGTCTGTGCTTTGTGA 1026 0.424 MERYEIIKDIGSGNFGVAKLVKEKWTGELYAVKFIERGFKIDEHVQREIINHRSLKHPNIIRFKEVLLTPTHLAIVMEYASGGELFERICSAGRFSEDEARYFFQQLISGVSYCHSMEICHRDLKLENTLLDGSSAPRLKICDFGYSKSSVLHSQPKSTVGTPAYIAPEVLSRKEYDGKVADVWSCGVTLYVMLVGAYPFEDPEDPRNFRKTLQRILSVHYSIPDYVRISKECRHLLSRIFVANPEKRITIPEIKKHPWFLKNLPVEFMEEGEGVLQNDMKESCETQSIEEILSIIQEARKPGEGPRVGEQFVGGSMDLDDIDADADIDDIETSGDFVCAL* 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g2079 341 PANTHER SERINE/THREONINE KINASE 2 335 - -
Vra7g2079 341 SMART serkin_6 4 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra7g2079 341 Pfam Protein kinase domain 4 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra7g2079 341 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Vra7g2079 341 ProSiteProfiles Protein kinase domain profile. 4 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra7g2079 341 ProSitePatterns Serine/Threonine protein kinases active-site signature. 119 131 IPR008271 GO:0004672|GO:0006468
Vra7g2079 341 Gene3D Phosphorylase Kinase; domain 1 1 79 - -
Vra7g2079 341 SUPERFAMILY Protein kinase-like (PK-like) 2 268 IPR011009 -
Vra7g2079 341 Gene3D Transferase(Phosphotransferase) domain 1 80 267 - -
Vra7g2079 341 CDD STKc_SnRK2 3 259 - -
Vra7g2079 341 PANTHER SERINE/THREONINE-PROTEIN KINASE SAPK1 2 335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g2079 Vra-Chr7 40408247 40411360 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g2079 3 270 CBL-interacting serine-threonine protein kinases AT4G24400 44.765 1.34e-70 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Vra7g2079 Pkinase 8.6e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g2079 K14498 - gmx:100807981 642.114