Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g2074 ATGAAGAGACTTGGCAGCTCCGATTCTCTGGGTGCTCTCATGACCATTTGTCCACCAACAGACGAACACAGTCCGAGGAACAACAACCACGTGTATGGCAGGGAGTTCCAGTCTATGTTGGAAGGACTAGACGATGAAGGGTGTGTGGAGGAACCAGGACACCACGCTGAGAAGAAACGAAGACTGAGCGTGGATCAGGTGAAAGCTTTGGAGAAGAACTTCGAAGTAGAGAACAAACTGGAACCTGACAGAAAGGTGAAGCTGGCACAAGAACTTGGCTTGCAACCAAGACAGGTTGCGGTTTGGTTCCAAAACCGTCGAGCCAGATGGAAAACGAAGCAATTGGAAAGAGACTATGGAGTCCTCAAAGCCAATTATGATTCCCTCAAACTTAACTACGACACCCTCCAACAAGACAACGAAGCCTTACTCAAAGAGATAAAGGAATTGAAATCAAGGTTGCCGCTGCAAGAAGAGAGCAACACTGAAAGCGATGTTTCGGTGAAGGAAGAGATGATAACACTGCAAGATAGTAACCCACTTTGTCAAACCGCCATTCCTGGATCCGAATGCTTCAACAAGAGTGATGAAGTTTTAGGGGCTTTCAAAGACGGCTCTTCCGACAGCGACTCCAGCGCGATCTTGAACGAAGAGAATGCCAACAACAACCACAACAGTCCCAACAACGCCACGATTTCATCTTCTGGGGTTATGCAAAGTCAGAGCTTTTTGTCATCGTCTTCTCCGATGAACTGTTTCCAGTTCCAGAAACAGTTTCCGACGCAGTACGTGAAGATGGAGGAGCATAATTTTCTGAGCGCGGACGAGGCGTGCAATTTCTTCTCGGATGAACAAGCGCCCACGCTGCAGTGGTACTGTTCAGAGGAGTGGAGTTAA 897 0.4794 MKRLGSSDSLGALMTICPPTDEHSPRNNNHVYGREFQSMLEGLDDEGCVEEPGHHAEKKRRLSVDQVKALEKNFEVENKLEPDRKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANYDSLKLNYDTLQQDNEALLKEIKELKSRLPLQEESNTESDVSVKEEMITLQDSNPLCQTAIPGSECFNKSDEVLGAFKDGSSDSDSSAILNEENANNNHNSPNNATISSSGVMQSQSFLSSSSPMNCFQFQKQFPTQYVKMEEHNFLSADEACNFFSDEQAPTLQWYCSEEWS* 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g2074 298 ProSiteProfiles 'Homeobox' domain profile. 53 113 IPR001356 GO:0003677
Vra7g2074 298 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 290 IPR045224 GO:0003700
Vra7g2074 298 SMART HOX_1 56 117 IPR001356 GO:0003677
Vra7g2074 298 SUPERFAMILY Homeodomain-like 39 115 IPR009057 -
Vra7g2074 298 PRINTS Lambda-repressor HTH signature 84 93 IPR000047 GO:0003677
Vra7g2074 298 PRINTS Lambda-repressor HTH signature 93 109 IPR000047 GO:0003677
Vra7g2074 298 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-6-LIKE 1 290 - -
Vra7g2074 298 MobiDBLite consensus disorder prediction 203 234 - -
Vra7g2074 298 Coils Coil 126 160 - -
Vra7g2074 298 Gene3D - 53 120 - -
Vra7g2074 298 Pfam Homeodomain 58 111 IPR001356 GO:0003677
Vra7g2074 298 ProSitePatterns 'Homeobox' domain signature. 88 111 IPR017970 GO:0000981|GO:0006355
Vra7g2074 298 MobiDBLite consensus disorder prediction 205 234 - -
Vra7g2074 298 CDD homeodomain 58 114 IPR001356 GO:0003677
Vra7g2074 298 Pfam Homeobox associated leucine zipper 113 154 IPR003106 GO:0006355|GO:0043565
Vra7g2074 298 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g2074 Vra-Chr7 40312243 40314387 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g2074 1 298 Homeobox Transcription Factor Family AT4G40060 47.678 6.59e-83 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vra7g2074 Homeodomain 3.2e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g2074 K09338 - gmx:100796213 472.626