Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g2073 ATGCCAAATTTTCCACATCCATACAACACTACCTTCCCTTCTCTTCCACCAATGCCTCCTCCTCCTAAATTCGATGTCGATGAACATCCTAAGTTAATCCAACATCATAGACATGTTGTTCAACTAGCGTTGGTTGTGTCCACATGCATAGTTGGTGTGTTCATCTTTCTCTTCATCGTCTCCACTCTCATAAGGTACTTTTACTCCAGGAGATATAACCGCACCCCAAATGGAACAAGACACACACCCATATTGTTCGATTTGAACGGAGATCCTCCCACTTCCAACAACGATCATGACGTCGCCGACCAAGACCACTTGCCGCCTGTCCACCACGTATGGTACATCCGCACCGTCGGTCTCCAACAGTCGCTTATAGACTCCATCACCGTCTTCAAATACAGAAAAAATGAAGGAATCATAGACAGCTCCGAATGTTCCGTGTGCCTCGGAGAGTTCCAACACGACGAAACTCTCAGGTTGTTGCCCAAATGCAGCCACGCCTTCCACGTGCCTTGCATTGACACCTGGCTCCGCTCCCACAAAAACTGCCCCCTCTGTCGCGCGCCTGTGCTCCGCGATGAAACTGGAGCGGTTGATCAGAATGTTCAGATGGATTCAAGCGCGTCTGTGTCTGATCATCAGAATTATGATGTTCGGGTGGAGGATTCTGATGATGGGGCTGGATTAGAAGACGGTGGTGGTTCTGGTGAGTCCTCTGGCGAAAGAGAAACGCAGCCTCTGAGGAGATCGGCTTCCATGGATGTTTCTTCTGCTTCAAATTCAATGGATATAGACACCCCTTATGGGGAAAAAGTGAGTTCCAGTAAGATTGATATGAGTAATATTGTAGAGAAACATGGAAGTGGGAGTTCGAATTCAAGCTCAAGTTCAACTACCATTCACAAGTTGGCTTCATTTGGACGTGCGTTGCAAAAGGGACCAGTCTCCATGGGAAGATCGTTTTCACATAACAGGAAATTTTTGTTCTCCACACATTATAGGAGTCAGAGTTCTACTCTTCCATTGTAA 1032 0.469 MPNFPHPYNTTFPSLPPMPPPPKFDVDEHPKLIQHHRHVVQLALVVSTCIVGVFIFLFIVSTLIRYFYSRRYNRTPNGTRHTPILFDLNGDPPTSNNDHDVADQDHLPPVHHVWYIRTVGLQQSLIDSITVFKYRKNEGIIDSSECSVCLGEFQHDETLRLLPKCSHAFHVPCIDTWLRSHKNCPLCRAPVLRDETGAVDQNVQMDSSASVSDHQNYDVRVEDSDDGAGLEDGGGSGESSGERETQPLRRSASMDVSSASNSMDIDTPYGEKVSSSKIDMSNIVEKHGSGSSNSSSSSTTIHKLASFGRALQKGPVSMGRSFSHNRKFLFSTHYRSQSSTLPL* 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g2073 343 MobiDBLite consensus disorder prediction 250 273 - -
Vra7g2073 343 ProSiteProfiles Zinc finger RING-type profile. 146 188 IPR001841 -
Vra7g2073 343 SUPERFAMILY RING/U-box 130 194 - -
Vra7g2073 343 MobiDBLite consensus disorder prediction 1 20 - -
Vra7g2073 343 PANTHER RING-H2 FINGER PROTEIN ATL54 14 335 - -
Vra7g2073 343 CDD mRING-H2-C3H2C2D_ZSWM2 145 188 - -
Vra7g2073 343 SMART ring_2 146 187 IPR001841 -
Vra7g2073 343 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 121 196 IPR013083 -
Vra7g2073 343 MobiDBLite consensus disorder prediction 205 273 - -
Vra7g2073 343 Pfam Ring finger domain 145 188 IPR001841 -
Vra7g2073 343 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 14 335 IPR044675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g2073 Vra-Chr7 40259424 40260872 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g2073 111 192 C3H Transcription Factor Family AT5G10380 75.610 6.41e-40 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g2073 - - gmx:102663026 340.117