Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g2072 ATGACAAACTCGCTCGTTAAATTCATGGTGTTGAGGGAGAACCGCAACCCTACGAGGGAAGTATGTGGAAAAGTCGATGGAGGCTCAAAAACCGAGGACGAGCAGAAAGTCTACTCTTGGTTATACACTTTGGCTCAGACTGACAAGAACTTGGTCTTTGAGTACGTTAGGTCCACTGAAAGAGGCTTAAGTTTCAGAGAAGCAGAGAGGAGACTTCGGGAAAATGGGCCAAATGTTCCACTTGAGTATTCCTTTCCAAGATGGTGGAGTCTTCTATGGAACGCTCTTTTTCACCCTTTTAATATCATTCTGATTATTCTGTCAGTTATGTCATTCATTGCCCGTGACAGTCCAAATGGATTTATCATGCTCGTGTTGGTTTTCATCAGTGTGACCCTCCGTTTCTATCAGGAATACAGCAGCTCAAAAGCAGCAATGAAGCTTTCAGAATTTGTAAAATGTCCAATAAAAGTTCAAAGATGCGCTGGTAGAGTTGTTCAGAAAGAACTTATTGTTCAAGTTGATCATAGGGATGTAGTTCCAGGTGACATTGTAATTTTTGAACCTGGAGACCTCTTTCCTGGAGATATCAGATTGTTATCTTCCAAACAACTTGTTGTAAGCCAGGCCTCACTAACTGGGGAATCTTGGACAACTGACAAAGCTTCTGATATCAGAGAAGACTACAATACTCCTTTATTGGATTTAAAAAACATCTGTTTCATGGGCACAAACGTGGTATCAGGTACTGGAACAGGCCTAGTGGTTTCAACTGGATCCAAGACTTACATGAGCACCATGTTTTCAAAAGTTGGGAAGAAGAAGCCACCAGATGATTTTGAAAAGGGTCTCAGATGGATATTTTACTTGATTATTTCTGTTATGCTAGTAGTTGTCACCATCCTGTTTGTGGTAAATTACTTGACATCTCTTAATTTGACCCAAAGTGTTATTTTTGCCATCTCTGTTGCATCTGTTCTGAATCCTCAGATGCTTCCTCTCATCATTAACACATGCCTTGCAAAAGGAGCACTTGCTATGGCTAAAGACAGGTGTATAGTAAAGAGTTTAACATCTATACGCGATATGGGATCAATGGATATTCTTTGTATTGACAAGACAGGCTCCCTTACAATGAATCATGCAGTCATGGTTAATCATCTTGATTACAGGGGTTTACCCCAAGAAAAAGTTTTACGCTATGCCTTCCTCAACTCTTACTTTAAGACTGATCAAAAGTATCCTCTGGATGATGCTATTCTGGCATTTGTATATTCAAATGGATTCAGGTTTCGGCCATCACTGTGGAGGAAAATAGACGAGATTCCTTTTGACTTCATAAGAAGAAGAGTATCTGTCATCTTAGAAACAGAAGACAGACACTCAAAATTCTTTGGCAGGTTCATGGTAACAAAAGGAGCACTATTAGAAGTATTGAAAGTTTGTTCTTTCATTGAGAATTTCGAACAAGATGAAATTTCCCCCTTCTCTTTCGATGATTATCAGCGTATTTTAAATCTTTCAGAAGATATTAGCAATGAAGGGTTAAGGATTCTAGGAGTAGCTATAAGGAAGCTGGAAATGGAGCACCTCAGTGACTATTTCAGATTACATGTGACATTGCAGACGCAAACATGTGAAACAAGTAATGGAAGCAAGAGAGAAGACGAGGATATCGAAAAAGACATGGTGTTCCTTGGCCTCATAACATTTTTCGACCCACCTAAGGACACAGCAAAGCAAGCATTGTGGCGTTTGTGTGAGAAGGGAGTGAAAGCAAAGGTTTTAACTGGTGATTCCCTCTCCCTGACAACAAGGGTATGCAGAGAAGTTGGCATAAGCACCGATCATGTAATAACAGGTCCTGAACTAGAGCTACTTGACCAAGACACGTTCCATGAGACAGTTAAAAGAGCCACAGTACTAGCACGTCTCACTCCAATTCAGAAACTCCATGTGGTGCAATCCTTGCAAACAGTTGGAAACCATGTTGTTGGGTTCTTAGGAGATGGAGTGAATGACTCACTGGCTTTAGATGCTGCGAATGTAAGCATTTCTGTGGATTCAGGAGTAGCCATTGCAAAAGACATGGCAGATATTATCTTACTTGAGAAAGACCTGAACGTGCTTGTTGCGGGAGTGGAGCATGGTAGATTCACTTTTGGCAACACAATGAAGTATGTTAAGATGTCAGTGATTGCTAACTTGGGAAGTGTCATTTCACTCCTCATAGCAACACTGATATTCAAGTATGAGCCCTTAACTTCTACACAGCTTCTGACACAGAATTTCATCTACAGTGTGGGACAGATAGCCATCGCCTGGGACAAGATGGATGAAGAGTATGTGAAGACACCTCACAAATCCTCAGAAAGAGGCCTGTCCATGTTCATACTGTGGAATGGATCAGTGTGCACTCTGTGTGATGTGGCAACACTCATGCTTCTTTGGTTTTATTACAAGGCTTACACTGATGTGACTCAGAAGTTTTTCCATTCAGCTTGGTTCATTGAAGGTGTTCTCTTGCAGACCTTCATCATCCACTTGATCAGGACTGAGAAAATCCCTTTCATGCAGGAGGTTGCATCTTGGCCTGTGATTTTCTCAACTGTTTTGACTTCTGCAATTGGAATTGCTCTTCCTTTCACACCCATTGGGAAGGTCATGGGATTCTCCCTTCTGCCCCTCTCATATTTCGGATTTTTGTTTATTCTTTTTCTTGGCTATTTTATAGTTGGCCATGTGGTTAAGAGACTTTACATATTGGTTTATAAGAGGTGGCTTTGA 2787 0.4098 MTNSLVKFMVLRENRNPTREVCGKVDGGSKTEDEQKVYSWLYTLAQTDKNLVFEYVRSTERGLSFREAERRLRENGPNVPLEYSFPRWWSLLWNALFHPFNIILIILSVMSFIARDSPNGFIMLVLVFISVTLRFYQEYSSSKAAMKLSEFVKCPIKVQRCAGRVVQKELIVQVDHRDVVPGDIVIFEPGDLFPGDIRLLSSKQLVVSQASLTGESWTTDKASDIREDYNTPLLDLKNICFMGTNVVSGTGTGLVVSTGSKTYMSTMFSKVGKKKPPDDFEKGLRWIFYLIISVMLVVVTILFVVNYLTSLNLTQSVIFAISVASVLNPQMLPLIINTCLAKGALAMAKDRCIVKSLTSIRDMGSMDILCIDKTGSLTMNHAVMVNHLDYRGLPQEKVLRYAFLNSYFKTDQKYPLDDAILAFVYSNGFRFRPSLWRKIDEIPFDFIRRRVSVILETEDRHSKFFGRFMVTKGALLEVLKVCSFIENFEQDEISPFSFDDYQRILNLSEDISNEGLRILGVAIRKLEMEHLSDYFRLHVTLQTQTCETSNGSKREDEDIEKDMVFLGLITFFDPPKDTAKQALWRLCEKGVKAKVLTGDSLSLTTRVCREVGISTDHVITGPELELLDQDTFHETVKRATVLARLTPIQKLHVVQSLQTVGNHVVGFLGDGVNDSLALDAANVSISVDSGVAIAKDMADIILLEKDLNVLVAGVEHGRFTFGNTMKYVKMSVIANLGSVISLLIATLIFKYEPLTSTQLLTQNFIYSVGQIAIAWDKMDEEYVKTPHKSSERGLSMFILWNGSVCTLCDVATLMLLWFYYKAYTDVTQKFFHSAWFIEGVLLQTFIIHLIRTEKIPFMQEVASWPVIFSTVLTSAIGIALPFTPIGKVMGFSLLPLSYFGFLFILFLGYFIVGHVVKRLYILVYKRWL* 929
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g2072 928 PANTHER MAGNESIUM-TRANSPORTING ATPASE, P-TYPE 1 22 927 - -
Vra7g2072 928 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 365 575 IPR023299 GO:0000166
Vra7g2072 928 Gene3D - 382 572 IPR023299 GO:0000166
Vra7g2072 928 TIGRFAM ATPase-IIIB_Mg: magnesium-translocating P-type ATPase 35 927 IPR006415 GO:0015444|GO:0015693|GO:0016021
Vra7g2072 928 PRINTS Magnesium-transporting ATPase signature 283 299 IPR006415 GO:0015444|GO:0015693|GO:0016021
Vra7g2072 928 PRINTS Magnesium-transporting ATPase signature 300 319 IPR006415 GO:0015444|GO:0015693|GO:0016021
Vra7g2072 928 PRINTS Magnesium-transporting ATPase signature 404 417 IPR006415 GO:0015444|GO:0015693|GO:0016021
Vra7g2072 928 PRINTS Magnesium-transporting ATPase signature 726 741 IPR006415 GO:0015444|GO:0015693|GO:0016021
Vra7g2072 928 PRINTS Magnesium-transporting ATPase signature 776 789 IPR006415 GO:0015444|GO:0015693|GO:0016021
Vra7g2072 928 PRINTS Magnesium-transporting ATPase signature 796 812 IPR006415 GO:0015444|GO:0015693|GO:0016021
Vra7g2072 928 PRINTS Magnesium-transporting ATPase signature 831 852 IPR006415 GO:0015444|GO:0015693|GO:0016021
Vra7g2072 928 PRINTS Magnesium-transporting ATPase signature 881 902 IPR006415 GO:0015444|GO:0015693|GO:0016021
Vra7g2072 928 SUPERFAMILY HAD-like 559 716 IPR036412 -
Vra7g2072 928 Pfam E1-E2 ATPase 164 349 - -
Vra7g2072 928 Gene3D - 119 880 - -
Vra7g2072 928 Gene3D - 154 258 - -
Vra7g2072 928 Pfam haloacid dehalogenase-like hydrolase 367 682 - -
Vra7g2072 928 Gene3D - 367 705 IPR023214 -
Vra7g2072 928 SUPERFAMILY Calcium ATPase, transduction domain A 164 269 IPR008250 -
Vra7g2072 928 Pfam Cation transporter/ATPase, N-terminus 54 111 IPR004014 -
Vra7g2072 928 SUPERFAMILY Calcium ATPase, transmembrane domain M 58 925 IPR023298 -
Vra7g2072 928 SMART Cation_ATPase_N_a_2 43 116 IPR004014 -
Vra7g2072 928 PANTHER CATION TRANSPORTING ATPASE 22 927 - -
Vra7g2072 928 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 123 412 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Vra7g2072 928 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 634 748 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g2072 Vra-Chr7 40248730 40255121 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g2072 61 820 Primary Pumps ATPases(2) AT1G10130 25.290 1.05e-60 222
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g2072 K01531 - pvu:PHAVU_002G260400g 1627.07