LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vra7g2059	ATGTTGGAAGAAGAGAGTAACAACGCCGATACCGGTGTTCACTGGAGAGCACATTCCAGATCAGTTTCTTGGACGGACCAGACTCCGGTGGTCCGGAAACCGCCGCGATCCCTTCAGCCTCTTTGCATCAGGAAAGACAGCGTGAAGGAGTGGCCGAGCGCCGGCAGCGACGATCTCGAGGTTTGGCTTCCGCCACCGACCCCAAGAGGGTCCACCAAAGGATCATCAAATTTGGGTTCGGGTTCGGGTACGGGTCAAGTTTTTCAGCTTAGGAGAGACAAGTTGGCTTTCTACGACAAGGAATGTTCGAAAATTGCGGAGCACGTGTACTTGGGAAGTGACACGGTGGCAAAGAACGAGGAGGTTTTGCGGCGGCACGGGATAACGCACGTGCTGAATTGCGTGGGGTTCGTTTGCCCCGAGTATTTCAAAAGCGACTTCGTCTACAAAACGCTATGGCTGCGGGACAGTCCCTCGGAGGACATCACAAGCATTCTCTACGACGTTTTCGATTACTTCGAGGATGTCCGACAACAGGGTGGGCGCGTGCTCGTACATTGCTGCCAGGGCGTGTCGCGCTCCACCTCGTTGGTCATCGCGTATCTCATGTGGAGGGAGAACCAGAGCTTCGAGGACGCGTTTCACTTCGTCAAGAACGCGCGTGGCATCATCAATCCGAACATGGGTTTCGCTTGTCAGCTATTGCAGTGTCAGAAGCGCGTGCACGCTACGCCCCCGAGTCCTAGTTCTGTGCTCAGAATGTATAGGATGGCTCCTCATTCTCCCTACGACCCTCTTCACCTTGTTCCGAAGATGGTCAACAACCCTTGCGCCCACGCGCTTGATTCGCGTGGTGCGTTTATTGTGCATGTTTCTTGTACTTTATATGTGTGGGTTGGGAAGGAGTGCGGCACGGTGATGTGTTGCAAGGCGCGTCATGCAGCTGCTCAGGTTGTTCGATATGAGAGGGCGACTGGGGAGATAGTTACCGTGATTGAGGATGAAGAGCCTGAGGAGTTTTGGGTTGCTCTTTCTCACAGGCATGAAGAGGTGAAGAACGTTGAAACAATGGAGATTGATGTAGGAATTCATCCCCGGAGAGTTGAGGATTATGATTTGGACTTTGGAATTTTTCACAAGGCACTTTCTGGTGGGGTTGTTCCACCCTTTTCTTTGTCCAAGGCTGGATCAGAAAACTGTCTCCCTTCTAAGGAAAATGGGTGGGTGAGATTGACTTGGAAGCTTACTGGAAGTACCATGAAAGGGTTCACATCCTCCAATATGAACATTGTAGAGGAAAATCACCACATGAATGTTGATCCTTTGCCTCCATCTTCTAAACCCTTTTACGATGAAGATGCGTCTGACTCAAAGATTTGCCCTTTACTTCAAAAAGAAGGTTTATCTTCATCTCCAGAGGCATTTTTGGCTAATCACACCTTGGTAAGGGAAGAGTCTAGTTTAGCGTTCAAAGGGTCTAACCCCTCCATTGCAGAGCGCAGAGGGACTAACCTGCCACCTCGTACGGTGCTCCTCTCGACCGGCAACAGTAAGGTCCGAGTAAGATCTAAGTCAATCTCATTACCTGCCTTGGATGATACTTTGTTGAGTGATGTTAGTTGCGAGCAATTCGACCATGAAAACAGTGGAAAATATAGTTAA	1662	0.5024	MLEEESNNADTGVHWRAHSRSVSWTDQTPVVRKPPRSLQPLCIRKDSVKEWPSAGSDDLEVWLPPPTPRGSTKGSSNLGSGSGTGQVFQLRRDKLAFYDKECSKIAEHVYLGSDTVAKNEEVLRRHGITHVLNCVGFVCPEYFKSDFVYKTLWLRDSPSEDITSILYDVFDYFEDVRQQGGRVLVHCCQGVSRSTSLVIAYLMWRENQSFEDAFHFVKNARGIINPNMGFACQLLQCQKRVHATPPSPSSVLRMYRMAPHSPYDPLHLVPKMVNNPCAHALDSRGAFIVHVSCTLYVWVGKECGTVMCCKARHAAAQVVRYERATGEIVTVIEDEEPEEFWVALSHRHEEVKNVETMEIDVGIHPRRVEDYDLDFGIFHKALSGGVVPPFSLSKAGSENCLPSKENGWVRLTWKLTGSTMKGFTSSNMNIVEENHHMNVDPLPPSSKPFYDEDASDSKICPLLQKEGLSSSPEAFLANHTLVREESSLAFKGSNPSIAERRGTNLPPRTVLLSTGNSKVRVRSKSISLPALDDTLLSDVSCEQFDHENSGKYS*	554

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vra7g2059	553	SMART	dsp_5	101	240	IPR020422	GO:0006470\|GO:0008138
	Vra7g2059	553	Gene3D	Protein tyrosine phosphatase superfamily	85	243	IPR029021	-
	Vra7g2059	553	ProSiteProfiles	Dual specificity protein phosphatase domain profile.	101	243	IPR020422	GO:0006470\|GO:0008138
	Vra7g2059	553	SUPERFAMILY	(Phosphotyrosine protein) phosphatases II	90	243	IPR029021	-
	Vra7g2059	553	PANTHER	MKPA PROTEIN	37	490	-	-
	Vra7g2059	553	MobiDBLite	consensus disorder prediction	51	85	-	-
	Vra7g2059	553	SUPERFAMILY	Actin depolymerizing proteins	247	347	-	-
	Vra7g2059	553	MobiDBLite	consensus disorder prediction	69	85	-	-
	Vra7g2059	553	CDD	DSP	102	236	-	-
	Vra7g2059	553	Gene3D	Severin	253	351	IPR029006	-
	Vra7g2059	553	ProSiteProfiles	Tyrosine specific protein phosphatases domain profile.	160	221	IPR000387	GO:0016311\|GO:0016791
	Vra7g2059	553	Pfam	Dual specificity phosphatase, catalytic domain	109	239	IPR000340	GO:0008138\|GO:0016311
	Vra7g2059	553	ProSitePatterns	Tyrosine specific protein phosphatases active site.	185	195	IPR016130	GO:0016311\|GO:0016791
	Vra7g2059	553	PANTHER	PROTEIN-TYROSINE-PHOSPHATASE MKP1	37	490	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vra7g2059	Vra-Chr7	40099532	40101559	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vra7g2059	34	137	Protein tyrosine phosphatase (PTP) family	AT3G55270	49.091	1.40e-25	109

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vra7g2059	-		-	vra:106766435	1131.32