Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g2030 ATGCAGAGCCAACTTGTGTGCAATGGTTGTAGGAGCCTTCTTCTTTACCCGAGAGGGGCAACCAATGTTTGTTGTGCATTGTGCAACACGATTACTTCTGTTCCTCCACCTGGGATGGACATGTCTCAACTTTACTGTGGAGGCTGTAGGACGTTGCTGATGTACACTCGTGGAGCTACAAGTGTGAGATGTTCTTGCTGTCATACTGTAAACCTTGTTCCAGCAACTAATCAGGTAGCTCATGTCCATTGTGGGAACTGCCGCACAGCCCTCATGTATCCTTACGGAGCTCCCTCAGTCAAATGTGCTATTTGCCACTATATTACTAATGTTAATACGAACAATGGACGGCTTCCAATCTCTGTCCATAGACCCAATGGGACAGCCAATACTGGAACATTACCTTCTACTTCAACATCAATGCCTCAATCTCAAAGTCAAACAGTAGTAGTAGAAAATCCGATGTCTGTGGATTCGAGTGGGAAATTGGTGAGCAATGTTGTGGTCGGCGTCACAACAGATAAGAAATAG 531 0.4539 MQSQLVCNGCRSLLLYPRGATNVCCALCNTITSVPPPGMDMSQLYCGGCRTLLMYTRGATSVRCSCCHTVNLVPATNQVAHVHCGNCRTALMYPYGAPSVKCAICHYITNVNTNNGRLPISVHRPNGTANTGTLPSTSTSMPQSQSQTVVVENPMSVDSSGKLVSNVVVGVTTDKK* 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g2030 176 PANTHER PROTEIN LSD1 1 174 IPR040319 -
Vra7g2030 176 Pfam LSD1 zinc finger 84 108 IPR005735 -
Vra7g2030 176 Pfam LSD1 zinc finger 46 70 IPR005735 -
Vra7g2030 176 Pfam LSD1 zinc finger 7 31 IPR005735 -
Vra7g2030 176 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 43 73 IPR005735 -
Vra7g2030 176 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 81 110 IPR005735 -
Vra7g2030 176 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 4 34 IPR005735 -
Vra7g2030 176 PANTHER LSD1-LIKE PROTEIN 1 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g2030 Vra-Chr7 39855213 39860172 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Vra7g2030 zf-LSD1 8.6e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g2030 - K12191 gmx:100776394 343.584
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2030 7 39855213 39860172 Vra7g2030 7 39855213 39860172 ECH