Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g2028 ATGGAAATCACATTGGAGTCTTCTGCTAGTCCGCAGCATAAAAAGATATCAGCCAGATGGAATCCGGTTGAAGCATGCCGGCCTATAATTGATGAAGCACCTGTGTTCTATCCAACTATTGAGGAGTTTGAAGACACACTTGGTTACTTAGCTAAGATTCGCCCCCAAGCTGAACCTTATGGCATATGTAGGATTGTCCCTCCAGCTTGCTGGGTACCACCATGCCCTCTTAAGGAGAAAGATTTATGGGAAAATGCAAAGTTTCCCACTCGTATCCAGCCAATTGATTTGCTTCAGAACAGGGAGCCCATGAGAAAGAAAGTTAGGGGAAGGAAGCGAAAACGTAGAAAGCAATCAAAGATGGGAGCAGGTAGGAGAACTGCCAAATCAGGCTCTGAAGCTAATGTTGCTTCTGAGCCTGAGGAGAAGTTTGGATTCCAATCTGGGTCAGACTTCACACTTAAAGACTTTCAGCAATATGCTAAGGTTTTTAAAGATTGCTACTTTGGATTGAATGATGCCAATGAATATGGAAAAGTTAGCGATTATAATCACTGGCAGAAACGGGAGCCCTCTGTGGAAGACATTGAAGGTGAATACTGGAGAATAATAGAGCAACCAACAGATGAGGTTGAGGTGTATTATGGAGCTGACTTGGAAACTGGATCACTTGGAAGTGGTTTTCCTAAGACATCATCCTTAACTAATAATGACTCAGATAGATATGCTGTGTCTGGCTGGAATCTGAATAACTTCCCGCGATTGCCAGGTTCTGCGTTATCTTTTGAAGGAAGTGATATCTCAGGAGTTCTAGTTCCATGGCTGTATATTGGAATGTGCTTTTCCTCATTTTGTTGGCATGTCGAGGACCATCATCTCTATTCACTTAATTATCTGCATTGGGGTGACCCAAAAGTATGGTATGGAGTACCTGGAATCCATGCTCCAGGTTTGGAAGCTGCAATGAGAAAGCACTTGCCTGATTTATTTGAAGAACAACCGAATCTACTCAATGAATTGGTGACTCAGTTATCTCCTTCAATTCTTAAATCCGAGGGGGTGCCTGTACATCGCACTGTTCAGAATTCAGGTGAATTTGTTGTTACCTTTCCAAGGGCGTATCACTGTGGCTTCAATTGTGGCTTCAATTGCGCAGAGGCTGTGAATGTGGCTCCGGTTGATTGGCTTGTGCATGGCCAGAATGCTGTTGAGCTTTACAGTTTGCAGTGCCGTAAGACTTCATTGTCCCATGACAAGTTATTATTTGGATGTGCTCAGGAAGCCGTGTGTGCCCTTGCAGAGGCAACTCTTCATGATAAAGAAAATCTAAAATATATAAAATGGAGTAGTGCTTGTGGGAAAGATGGAGTTCTTACCAAGGCAATTAAGACAAGGATAAATATGGAAAAGGAGAGGCTTGACTGTCTTCCCACTCATTTAAAGAAGCTTAGGATGAACAGTGAGTTTGATTTGTTTGAGGAAAGAGAATGCTTCTCTTGCTTCTATGACTTGCACTTATCCGCCATAGGTTGCAAGTGCTCCCCTGATACTTATTCATGTCTCAATCACTCACATTTGTTTTGCTCATGTGAAGTGGACCAAAGCTTTGTTCTGTTTCGTTATACCATGAATGAACTAGGTACATTGGTTGAGGCATTAGAAGGAGAAGAACATGCTATTCTAGTGTGGGCAAATAGAAACACTGGACTGGTATCTGCTAATCCTGAGGATACTTGCATCTATAAACAAGATGCGGAGAGTTACAAAGGATGGAAAAGCTCAACATATTGTGCAGGAACCAATAATAAGTCAAATTCAAATATACCTAGCAGTTCTTATAACCACATTTCTGCGGAGTTAGTGCACTCAGAGTTTCACCGTGAAACTTATAGTGCACAATATGGGACTAAAGATTGTCAGAAAGATATTAAGAATGAAGAAAAATTGGTCATGTACAATGAAGATAAGGTGAAGGAAGGTTCTCTGGATTTAAATATAGATGTTATGTTTGTTGAACGTGAAAATCGTTTTCTGCATGCTGCTGAGTACCATCATAATAAGAGTGTTCCATATGTTGGAAAAGTATGCTATTCAGAGGTCAGAAAGAAACAAGACAACATGGAACCTGGGGCTGGATGTATAACTTCCTTGGAGAAAGAATTTTCATCATGTTCAAGGGACGTTCAAAATTCTTGTACACTAGATGGTTATAAATTGTTTGGGGTGGACCTGCAGATGCATTCTGATTCGAGAGAACAACTCAACGGCGTATTTAAAATAGGTGATATTGAAACTTCCAACGCAAGTCTATCTTTGACAAACCAAAACTTCATAATGAAGAATATCAGTGTTTCTGTTGAGCCTGTGAATTTGGGCATTGTTATGTGTGGTAAGTTGTGGTGCAGTAGGCATGCAATATATCCAAAAGGATTCAAGAGTCGTGTTAAGTTCTTAAGCTTTCTTGATCCACCAAGAATTTGTAACTATGTTTCTGAAGTCTATGATGCTGGATTTCTTGGGCCTCTTTTCAAGGTTACCATGGAAGAACATCCAAGTGAGATCTTCACAAACACCTCGGCAGATAAGTGCTGGGAGTCAGTTCTTTTGAGACTAAATCATGAAACCGAGAAGCTAAGGAGTCAAGGTGAAAGAGAACTTCCTCCCTTGGAGCTTCTGAAAAACATTAATGGTCATAAAATGTTTGGATTCCTTTCACCTTCCATTATTCAGGCTATTGAAGCTCTGGACCCCAATCATCAATGCGTCGAGTACTGGAATCACAAAGAAGTTGTCTCTGAATCTTCAGAAAGTGGCATTGATGACTGTAAGCTCAGTCACGGTTCAAGTAACTCTCTAAGTGATGTCAAAACCAGACTTCTTGGTCCTGGTTTGAGAAAGCTGGAACAAGATAGCAGCCGAAGACATTATGATTCTTTTGAAGAGATGAAATTGGTGGTAGAAGGGTTATTGAAAAAGGCGAATGCTGAAGAATTAAGTGCCATGCACAAGTTATTCAGCTCTGATGCACAGTTCAACAAGTGGAGAGTGGCATATGTAACGTTGATTGAGGAAATCCGGAAAGCTTGTGCATAA 3093 0.4093 MEITLESSASPQHKKISARWNPVEACRPIIDEAPVFYPTIEEFEDTLGYLAKIRPQAEPYGICRIVPPACWVPPCPLKEKDLWENAKFPTRIQPIDLLQNREPMRKKVRGRKRKRRKQSKMGAGRRTAKSGSEANVASEPEEKFGFQSGSDFTLKDFQQYAKVFKDCYFGLNDANEYGKVSDYNHWQKREPSVEDIEGEYWRIIEQPTDEVEVYYGADLETGSLGSGFPKTSSLTNNDSDRYAVSGWNLNNFPRLPGSALSFEGSDISGVLVPWLYIGMCFSSFCWHVEDHHLYSLNYLHWGDPKVWYGVPGIHAPGLEAAMRKHLPDLFEEQPNLLNELVTQLSPSILKSEGVPVHRTVQNSGEFVVTFPRAYHCGFNCGFNCAEAVNVAPVDWLVHGQNAVELYSLQCRKTSLSHDKLLFGCAQEAVCALAEATLHDKENLKYIKWSSACGKDGVLTKAIKTRINMEKERLDCLPTHLKKLRMNSEFDLFEERECFSCFYDLHLSAIGCKCSPDTYSCLNHSHLFCSCEVDQSFVLFRYTMNELGTLVEALEGEEHAILVWANRNTGLVSANPEDTCIYKQDAESYKGWKSSTYCAGTNNKSNSNIPSSSYNHISAELVHSEFHRETYSAQYGTKDCQKDIKNEEKLVMYNEDKVKEGSLDLNIDVMFVERENRFLHAAEYHHNKSVPYVGKVCYSEVRKKQDNMEPGAGCITSLEKEFSSCSRDVQNSCTLDGYKLFGVDLQMHSDSREQLNGVFKIGDIETSNASLSLTNQNFIMKNISVSVEPVNLGIVMCGKLWCSRHAIYPKGFKSRVKFLSFLDPPRICNYVSEVYDAGFLGPLFKVTMEEHPSEIFTNTSADKCWESVLLRLNHETEKLRSQGERELPPLELLKNINGHKMFGFLSPSIIQAIEALDPNHQCVEYWNHKEVVSESSESGIDDCKLSHGSSNSLSDVKTRLLGPGLRKLEQDSSRRHYDSFEEMKLVVEGLLKKANAEELSAMHKLFSSDAQFNKWRVAYVTLIEEIRKACA* 1031
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g2028 1030 ProSiteProfiles JmjN domain profile. 33 74 IPR003349 -
Vra7g2028 1030 Gene3D Cupin 18 391 - -
Vra7g2028 1030 SMART fyrc_3 842 937 IPR003889 GO:0005634
Vra7g2028 1030 MobiDBLite consensus disorder prediction 101 142 - -
Vra7g2028 1030 Pfam JmjC domain, hydroxylase 274 390 IPR003347 -
Vra7g2028 1030 Pfam C5HC2 zinc finger 497 548 IPR004198 -
Vra7g2028 1030 SMART fyrn_3 792 836 IPR003888 GO:0005634
Vra7g2028 1030 SMART cupin_9 241 407 IPR003347 -
Vra7g2028 1030 SUPERFAMILY Clavaminate synthase-like 153 428 - -
Vra7g2028 1030 PANTHER DEMETHYLASE JMJ14-LIKE PROTEIN, PUTATIVE-RELATED 1 1029 - -
Vra7g2028 1030 Pfam F/Y rich C-terminus 840 927 IPR003889 GO:0005634
Vra7g2028 1030 MobiDBLite consensus disorder prediction 105 123 - -
Vra7g2028 1030 Pfam F/Y-rich N-terminus 789 833 IPR003888 GO:0005634
Vra7g2028 1030 Gene3D - 784 922 - -
Vra7g2028 1030 ProSiteProfiles FYR domain FYRN motif profile. 778 836 IPR003888 GO:0005634
Vra7g2028 1030 Pfam jmjN domain 34 67 IPR003349 -
Vra7g2028 1030 PANTHER LYSINE-SPECIFIC DEMETHYLASE 1 1029 - -
Vra7g2028 1030 SMART JmjN_1 32 73 IPR003349 -
Vra7g2028 1030 ProSiteProfiles FYR domain FYRC motif profile. 838 928 IPR003889 GO:0005634
Vra7g2028 1030 ProSiteProfiles JmjC domain profile. 241 407 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g2028 Vra-Chr7 39828959 39837321 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g2028 780 964 JUMONJI Transcription Factor Family AT1G30810 54.054 7.20e-53 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Vra7g2028 JmjC 1.5e-44 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g2028 - - pvu:PHAVU_002G251900g 1939.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2028 7 39828959 39837321 Vra7g2028 7 39828959 39837321 ECH