Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g2026 ATGGCTTTCTCTTGTCAATTACTTGTTCACTTTGGCTTATTGATTATCCTTCAGCTACACTTTCTCTTCCTTGGTGTATCACCAGCCACTTTAAGCATCACCATTGACACAGAAGCCTTGATCTCATTCAAATCTCAACTGAGAAATGACACTCTTATTCCCTTATCTTCTTGGAACCAAAGTTCATCCCCTTGCAATTGGACTGGTGTCCAATGTGATACCCTTAACCAAAGGGTAATTTCCTTGGAACTTCCAAGCTTGGGACTCTCAGGTCAATTAAGTCCTTATATCTGTAACCTCTCCTCTCTTCAGTCCCTCCAATTGCAGGATAACCAACTCACTGGACTCATTCCTGATCAAATTGGCAACCTATTCAGTTTGAAAGTTCTAAATATGAGCTCTAACATGTTAGAAGGAAAGCTTCCTTCCAACATCACCCTCTTGAATCAGCTCCAGATTCTTGATCTTTCCTCAAACAAGATCGTCAGCCAGATTCCTCAAGACATTGGCAGCTTGAAAAAGCTTGAGGTTTTGAAGCTGGGAAAGAATAGCCTCTATGGTGCAATCCCAGCTTCTCTAGGAAACATTTCTTCTCTCAAAAATATCAGTCTTGGCACCAACTTTCTCACTGGTTGGATTCCCAGTGACTTGGGTAGGCTTCATGATTTGATTGAGCTTGATCTCGTTCTTAACAATCTCAATGGGACTGTTCCACCTGCTGTGTATAACTTATCTTCCCTGGTTAACTTTGCCTTAGCTTCAAACTCTCTGTGGGGTGAGATTCCTCAGGATGTTGGTCTCAAACTTCCAAAACTCATAGTGTTCAACATCTGCTTCAATTATTTTACAGGTGGAATTCCAGGGTCTTTGCACAACCTCACCAACATTCAGGTCATTCGCATGGCTTCCAACCTTTTGGAAGGAACAGTGCCACCTGGTTTGGGAAATCTCCCATTTCTTCGCATGTATAATATTGGTGGTAACAGGATAGTGAGTTCAGGTGTCCGAGGTTTAGACTTCATTACTTCTTTGACAAACAGTACTCGACTCAAGTTTCTGGCAATTGATGGAAATATGCTGGAAGGTGTGATTCCTGAAACCGTTGGCAATCTCTCCAAGGACCTGTCAACGTTATACATGGGACAGAATCGTTTCAATGGAAGCATTCCCCGCTCCATTGCTCTTCTTAGTGGCTTGAAGTTGTTAAACATAAGCCATAATTCAATCTCTGGAGAAATCCCACATGAGTTAGGCCAGTTAGCGGAACTACAAGAACTATCTCTAGCTGGAAATGAGATTTCAGGGGTTATTCCAGATTCCCTTGGTAATCTCCTCAAGTTAAACCTGATTGATTTGTCAAGAAACAAACTTGTGGGGAGAATACCAACCAGTTTTGGGAATTTGCAAAGTCTGCTTTACATGGACTTATCAAGCAACCAACTCAATGGAAGCATTCCTGTGGAAATGCTCAATCTCCAAACTTTGAGCAATGTTTTGAACTTGTCAATGAACTCTTTGAGTGGACCGATACCTCAAATTGGGAGATTGAGTGGTGTTGCCTCCATTGACTTTTCTAGCAATCAATTGGATGGTGACATACCCAGTTCATTCAGCAATTGTCTAAGTTTGGAAAGTTTGTTTTTGAACCGGAATCAGCTTTCGGGTTCCATTCCAAAGGCTCTTGGAGAAGTGAGAGCCTTGGAAACTTTGGACCTATCCACCAACCGACTCTCTGGAACCATTCCTGTTGAACTTCAAAATTTACAGGTGCTTAGGCTCTTAAACCTCTCGTACAATGATTTAGAAGGAGCAATTCCAAGTGGTGGAGTTTTCCAAAATGTCTCTGCTATACATTTAGAAGGCAATGAAAATCTCTGCTTGCAAGCCCCATGTGTAAATCGTGGCGAAGGAAGAAGAAATGTGAGATATTACATCCTCATAGCCGTTGCAGTAGCATTGGTACTGTTTCTCACAATTGGGTCTATACTATATATAAAGAGCAGAAAGGTGAAGGTAGCGACATTATCATCATCATCATCACCATCTGAACAGCTAAAACCTCTTGCACCAATGATCTCTTATGACGAGCTTCGTTTGGCAACTGAGGAATTCAACCAGGAAAACTTACTAGGAGTTGGGAGCTTTGGCTCAGTTTACAAAGGCAATCTAAGTCATGGAACTACTGTTGCGGTGAAAATTCTTGACACCCTAAGAACTGGTTCTCTAAAGAGTTTCTTTGCAGAATGTGAGGCTATGAAGAACTCGAGGCATCGAAATCTGGTTAAGCTCATCACATCATGCTCCAGTGTTGACTTCAAAAACAATGACTTTCGGGCTCTGGTGTATGAGTACATGTGCAATGGTAGCTTGGAAGATTGGATTAAGGGGAAGAGAAAGCATGCAAATGGAAATGGGTTGAACCTTATGGAGAGATTGAACATAGCAATAGATGTTGCGTGTGCACTGGACTACCTGCACAATGATAGTGAAATCCCAGTTGTGCACTGTGATTTGAAGCCTAGCAACATTCTCTTGAACGAAGATATGACTGCAAAGGTTGGAGACTTTGGATTGGCTAGGTTGCTTGTTCAAAGATCAACCAATCAAGTTTCCATTAGCTCCACTCATGCTCTTAGGGGCTCAATTGGTTACATACCTCCAGAATATGGATGGGGAGAGAAAGTAAGTGCAGCTGGAGATGTGTATAGTTTTGGTATAGTGTTGCTGGAGCTGTTCTCTGGGAAAAGTCCAACTGATGAATGCTTCACTGGAGGCCTAAGCATAAGAAGATGGATGCATTCAGCATTCAAAGAGAAGACAATGGAAGCCATTGACCCTGAGTTGGTGTCCCTCATTTTGCATGATGACCCTTCAGAGGGACCAAATAACGTACAAGTGTATTGTGTGGAAGCAATTGTAGGAGTAGCCATATCTTGCACTGCAGACAACCCAGATGAACGCATTGGCATCAGAGATGCTGTTAGCCAACTCAAATCTTCCAGAGACTCTCTTTTGAATCACTCTGATCATACTTCTGCTGCACATACCAACTCTTACTTAAAAGTTTTACTAAAATAA 3078 0.4204 MAFSCQLLVHFGLLIILQLHFLFLGVSPATLSITIDTEALISFKSQLRNDTLIPLSSWNQSSSPCNWTGVQCDTLNQRVISLELPSLGLSGQLSPYICNLSSLQSLQLQDNQLTGLIPDQIGNLFSLKVLNMSSNMLEGKLPSNITLLNQLQILDLSSNKIVSQIPQDIGSLKKLEVLKLGKNSLYGAIPASLGNISSLKNISLGTNFLTGWIPSDLGRLHDLIELDLVLNNLNGTVPPAVYNLSSLVNFALASNSLWGEIPQDVGLKLPKLIVFNICFNYFTGGIPGSLHNLTNIQVIRMASNLLEGTVPPGLGNLPFLRMYNIGGNRIVSSGVRGLDFITSLTNSTRLKFLAIDGNMLEGVIPETVGNLSKDLSTLYMGQNRFNGSIPRSIALLSGLKLLNISHNSISGEIPHELGQLAELQELSLAGNEISGVIPDSLGNLLKLNLIDLSRNKLVGRIPTSFGNLQSLLYMDLSSNQLNGSIPVEMLNLQTLSNVLNLSMNSLSGPIPQIGRLSGVASIDFSSNQLDGDIPSSFSNCLSLESLFLNRNQLSGSIPKALGEVRALETLDLSTNRLSGTIPVELQNLQVLRLLNLSYNDLEGAIPSGGVFQNVSAIHLEGNENLCLQAPCVNRGEGRRNVRYYILIAVAVALVLFLTIGSILYIKSRKVKVATLSSSSSPSEQLKPLAPMISYDELRLATEEFNQENLLGVGSFGSVYKGNLSHGTTVAVKILDTLRTGSLKSFFAECEAMKNSRHRNLVKLITSCSSVDFKNNDFRALVYEYMCNGSLEDWIKGKRKHANGNGLNLMERLNIAIDVACALDYLHNDSEIPVVHCDLKPSNILLNEDMTAKVGDFGLARLLVQRSTNQVSISSTHALRGSIGYIPPEYGWGEKVSAAGDVYSFGIVLLELFSGKSPTDECFTGGLSIRRWMHSAFKEKTMEAIDPELVSLILHDDPSEGPNNVQVYCVEAIVGVAISCTADNPDERIGIRDAVSQLKSSRDSLLNHSDHTSAAHTNSYLKVLLK* 1026
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g2026 1025 SMART serkin_6 704 1005 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra7g2026 1025 SMART LRR_typ_2 148 172 IPR003591 -
Vra7g2026 1025 SMART LRR_typ_2 293 317 IPR003591 -
Vra7g2026 1025 SMART LRR_typ_2 468 492 IPR003591 -
Vra7g2026 1025 SMART LRR_typ_2 588 613 IPR003591 -
Vra7g2026 1025 SMART LRR_typ_2 420 443 IPR003591 -
Vra7g2026 1025 SMART LRR_typ_2 564 587 IPR003591 -
Vra7g2026 1025 SMART LRR_typ_2 100 123 IPR003591 -
Vra7g2026 1025 SMART LRR_typ_2 124 147 IPR003591 -
Vra7g2026 1025 Gene3D Phosphorylase Kinase; domain 1 686 784 - -
Vra7g2026 1025 SUPERFAMILY L domain-like 36 330 - -
Vra7g2026 1025 ProSitePatterns Serine/Threonine protein kinases active-site signature. 833 845 IPR008271 GO:0004672|GO:0006468
Vra7g2026 1025 SUPERFAMILY Protein kinase-like (PK-like) 680 997 IPR011009 -
Vra7g2026 1025 SUPERFAMILY L domain-like 344 626 - -
Vra7g2026 1025 Pfam Leucine rich repeat N-terminal domain 36 73 IPR013210 -
Vra7g2026 1025 PANTHER PROTEIN KINASE, PLANT-TYPE, PUTATIVE-RELATED 22 1004 - -
Vra7g2026 1025 CDD STKc_IRAK 710 998 - -
Vra7g2026 1025 Gene3D Ribonuclease Inhibitor 26 86 IPR032675 -
Vra7g2026 1025 Gene3D Ribonuclease Inhibitor 87 336 IPR032675 -
Vra7g2026 1025 Gene3D Ribonuclease Inhibitor 337 633 IPR032675 -
Vra7g2026 1025 Pfam Protein kinase domain 705 994 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra7g2026 1025 ProSitePatterns Protein kinases ATP-binding region signature. 710 732 IPR017441 GO:0005524
Vra7g2026 1025 Pfam Leucine rich repeat 102 161 IPR001611 GO:0005515
Vra7g2026 1025 Pfam Leucine rich repeat 542 601 IPR001611 GO:0005515
Vra7g2026 1025 Pfam Leucine rich repeat 422 481 IPR001611 GO:0005515
Vra7g2026 1025 ProSiteProfiles Protein kinase domain profile. 704 1005 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra7g2026 1025 Gene3D Transferase(Phosphotransferase) domain 1 785 1020 - -
Vra7g2026 1025 PANTHER OS04G0122200 PROTEIN 22 1004 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g2026 Vra-Chr7 39816595 39820043 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g2026 36 1011 Receptor kinase-like Gene Family AT3G47570 42.528 0.0 721
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Vra7g2026 Pkinase 9.5e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g2026 - - gmx:102664710 1597.02