Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g2024 ATGTCTGATTTCAACTGGGAAGCTGATAAAATGTTAGATTTATATATCCACGATTATCTTACGAAGAGGCAATTGCATGCCACTGCAAGAGTATTCAAGGCCGAAGCAAATGTTTCAACCGATCCTGTTGTTATAGAAGCACCTTGTGGTTTTCTCTTTGAGTGGTGGTCTGTCTTCTGGGACGTATATATTTCCAGGACAAATATTGCCAGGACAAATCGGAAGCACACAGAAGCAGCAGCATCTTGCAGTAAGAATCAACAAATCAAAGCTCGAGTAATGCAGAATCAATTAGAACAAGAGTTTCAGAATATAGACCAGAATCAACTAGCACAAATGAAACTCTTGATGCAAAGACGTGCTCAGGAGCTGCAGCAACGCCGGGGTGGAAATCAATTTATTAGGGGAAGTGCTAGCTGTCCTATTAGCAATGATCCTTTAATGAGGCAGAACCAGACAGCTCCTAATGCTATGGCAACAAAGTTATACAATGACAGGTTGAAGCTTCCATGTCAGAGAGATGTTTTAGAAGATGCAAACATTAAGCAAAAGGTAGCTGATGACGTTGGTAAGCTTTTAAACCCAAACCATTCAGTATTGTTGAAAGCGGCTGGGACATCTGGTGAAATGGCTTCAGGGCAAACATTGCTCAATTCTCCTCCTGGCATTTTACCGGGGAACCTTCCATATCTGAACCAGAAGCTTCCAGGGTCTACGCAAGACGTAAAGAGTGAGATGAATGCATTGGAGGGGTCTCAAGATGATATTTCAGAAGGATCCTTTATTGGTTGTCTTGGATCTAATCCAGGTGCTAGCATTTTGACTCTGAAAGGATGGCCTCTAGCAGGGCTAGATGAGCTTCGTTCTGGCATTCTCCAGCATAATAGTTTGATGCACTCTGCACAATCCTTAAACCAATTTTCTCTACGGCAAAAACTTATGCTTCAGGCACAACAAAATTTGATTTCACCTTCTGTCATTGATATGGAGAGAAGAAGACTTGATATGCTTTTTAATGATCGAAATATGAGTCTTGTGAAAGATGGCCAGTCAAATTCCGTAGATGATTTGGTTCCCAGTAATGGATCACCTTCACAAGTTGGTTCCCCAATGTTGCCCCATCCAGACTCAGATGTGTTCTTTAAGCAACAAATTCAAAATAGTAGCCAGCAGCTTCAACAATATTCTCAACATCATCTTCCTGGCCAACCGTCTGAGAATCTCCAGCAGCAGCAAGAAAAAATTGGTCTTGGTCCTGGAAGCATGACTATGGAGGGAAATGTGTCCAATTCCTTACAAGGAAACGATCAGGCTCCAAAAGGTAAACTAGTGCGAAAGCGAAAGGCAGCATTGTCTTCAGGTCCTGGTAATAGCTCTGGAACTGCAAACACCACTGGACCACCTGCCAGTTCACCTTCAACACCATCTACACAAACACCTGGAGAGATGATAACAGCGTCAACTCTGCAACAGAATGCTCCTTCCTCTAAGTCATCACAAAATCAATTGGATGATATGGATCATCTTGTGGGTGATGGATGTTTGGGTGACAATATTGAGCCATCCGTATCTCCTGATGACAATGACATCAGAGAAAAAGTTGGTAAAGGATTAATTTTCAAGGAGATCAAGCATATAATGGCAGGTTCACATAAAGTTGAGTGTTGTCACTTCTCCTCAGATGGAAAACTTCTTGCTACTGGTGGCCATGATAACAAGGTTTCTCTGTGGTGCACCGAATTGTTTAACCAGAAATCTACTCTTGAAGAGCACAGTGAATGGATAACTGATGTTCGATTTTGCCCAAGCATGCTTCGTGTTGCTACATCCTCAGCAGACAAAACTGTTAGGGTTTGGGATATTGATAATCCAAGTTATTCTCTTCGAACATTCACTGGACATGCTTCGACTGTGACGTCGCTAGATTTTCACCCTAGCAAAGATGACCTTATTTGCTCATGTGACAATAGTGAGATAAGATACTGGAGCATTAAAAATGGTAGTTGTACTGGGGTTTTCAAGGGTGGTGCAACTCAAATGAGATTTCAACCTTGTTTGGGAAGGCTTCTTGCAGCTGCGGTTGATGATGTTGTATCCATTTTTGATGTAGAAACCCTGGGTTGCAGACTTAAATTACAGGGCCATAATGATGTTGTGCGTTCTGTGTGCTGGGATTTTTCTGGAAAATATGTGGCTTCTCTGAGTGATGATATGGTTAGAGTATGGAATGTTGGAATTGGCAGCAAAGGGGAAAGCATTCACGAGTTGGCTGCATCGGGGAACAAATTCAACACCTGTGTTTTCCATCCCATCTATCCTTGGTTGGTCATTGGCTGCCACAAGACTATTGATGTGTGGGACTTCGGTGAGAACAAGACATTGACCATGCCTGCACACGAAAAGCTTGTATCTTCCTTGGCAATATCAAATGCTAATGGCTTGCTGGCTTCAACTAGTCATGACAAACATTTGAAGATCTGGAAGGGACCAGCATTTTAG 2499 0.4242 MSDFNWEADKMLDLYIHDYLTKRQLHATARVFKAEANVSTDPVVIEAPCGFLFEWWSVFWDVYISRTNIARTNRKHTEAAASCSKNQQIKARVMQNQLEQEFQNIDQNQLAQMKLLMQRRAQELQQRRGGNQFIRGSASCPISNDPLMRQNQTAPNAMATKLYNDRLKLPCQRDVLEDANIKQKVADDVGKLLNPNHSVLLKAAGTSGEMASGQTLLNSPPGILPGNLPYLNQKLPGSTQDVKSEMNALEGSQDDISEGSFIGCLGSNPGASILTLKGWPLAGLDELRSGILQHNSLMHSAQSLNQFSLRQKLMLQAQQNLISPSVIDMERRRLDMLFNDRNMSLVKDGQSNSVDDLVPSNGSPSQVGSPMLPHPDSDVFFKQQIQNSSQQLQQYSQHHLPGQPSENLQQQQEKIGLGPGSMTMEGNVSNSLQGNDQAPKGKLVRKRKAALSSGPGNSSGTANTTGPPASSPSTPSTQTPGEMITASTLQQNAPSSKSSQNQLDDMDHLVGDGCLGDNIEPSVSPDDNDIREKVGKGLIFKEIKHIMAGSHKVECCHFSSDGKLLATGGHDNKVSLWCTELFNQKSTLEEHSEWITDVRFCPSMLRVATSSADKTVRVWDIDNPSYSLRTFTGHASTVTSLDFHPSKDDLICSCDNSEIRYWSIKNGSCTGVFKGGATQMRFQPCLGRLLAAAVDDVVSIFDVETLGCRLKLQGHNDVVRSVCWDFSGKYVASLSDDMVRVWNVGIGSKGESIHELAASGNKFNTCVFHPIYPWLVIGCHKTIDVWDFGENKTLTMPAHEKLVSSLAISNANGLLASTSHDKHLKIWKGPAF* 833
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g2024 832 Pfam LisH 10 36 IPR006594 GO:0005515
Vra7g2024 832 SMART WD40_4 624 663 IPR001680 GO:0005515
Vra7g2024 832 SMART WD40_4 789 828 IPR001680 GO:0005515
Vra7g2024 832 SMART WD40_4 539 578 IPR001680 GO:0005515
Vra7g2024 832 SMART WD40_4 666 702 IPR001680 GO:0005515
Vra7g2024 832 SMART WD40_4 749 787 IPR001680 GO:0005515
Vra7g2024 832 SMART WD40_4 705 743 IPR001680 GO:0005515
Vra7g2024 832 SMART WD40_4 581 620 IPR001680 GO:0005515
Vra7g2024 832 MobiDBLite consensus disorder prediction 489 505 - -
Vra7g2024 832 PANTHER LISH-SSDP-WD40 1 828 - -
Vra7g2024 832 Pfam WD domain, G-beta repeat 708 743 IPR001680 GO:0005515
Vra7g2024 832 Pfam WD domain, G-beta repeat 793 828 IPR001680 GO:0005515
Vra7g2024 832 Pfam WD domain, G-beta repeat 628 663 IPR001680 GO:0005515
Vra7g2024 832 Pfam WD domain, G-beta repeat 585 620 IPR001680 GO:0005515
Vra7g2024 832 Pfam WD domain, G-beta repeat 550 577 IPR001680 GO:0005515
Vra7g2024 832 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 631 668 - -
Vra7g2024 832 ProSiteProfiles Trp-Asp (WD) repeats profile. 588 629 IPR001680 GO:0005515
Vra7g2024 832 CDD WD40 542 828 - -
Vra7g2024 832 Gene3D - 679 830 IPR015943 GO:0005515
Vra7g2024 832 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Vra7g2024 832 ProSiteProfiles Trp-Asp (WD) repeats profile. 631 672 IPR001680 GO:0005515
Vra7g2024 832 ProSiteProfiles Trp-Asp (WD) repeats profile. 546 577 IPR001680 GO:0005515
Vra7g2024 832 MobiDBLite consensus disorder prediction 347 370 - -
Vra7g2024 832 Gene3D - 474 678 IPR015943 GO:0005515
Vra7g2024 832 SUPERFAMILY WD40 repeat-like 551 828 IPR036322 GO:0005515
Vra7g2024 832 SMART Lish 8 40 IPR006594 GO:0005515
Vra7g2024 832 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 796 832 - -
Vra7g2024 832 MobiDBLite consensus disorder prediction 380 437 - -
Vra7g2024 832 MobiDBLite consensus disorder prediction 489 508 - -
Vra7g2024 832 ProSitePatterns Trp-Asp (WD) repeats signature. 607 621 IPR019775 -
Vra7g2024 832 MobiDBLite consensus disorder prediction 347 481 - -
Vra7g2024 832 MobiDBLite consensus disorder prediction 452 481 - -
Vra7g2024 832 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 1 828 IPR044716 GO:0003714
Vra7g2024 832 ProSiteProfiles Trp-Asp (WD) repeats profile. 796 828 IPR001680 GO:0005515
Vra7g2024 832 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 588 623 - -
Vra7g2024 832 ProSiteProfiles Trp-Asp (WD) repeats profile. 712 744 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g2024 Vra-Chr7 39775438 39790925 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g2024 625 832 Miscellaneous Gene Families AT5G08390 26.047 1.58e-11 66.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Vra7g2024 WD40 0.0078 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g2024 - - vun:114177037 1359.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2024 7 39775438 39790925 Vra7g2024 7 39775438 39790925 ECH