Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g2013 ATGTCATCAAGTGGAAGCCTTTGGAACTATGAGGAAGAAAAGGCATTTGAGAATGCCATAGCTATGCATTGGATTGAAGAAGCCTCAAATGAGCAATGGGAGAAAATTGCTTCAGCAGTTCCCAGCAAAAGCATGGAAGAAGTGAAGCAGCATTACCAGATTCTAGTGGAGGATGTAAGTGCAATAGAGGCAGGTCACATACCATTCCCCAACTATACTTCTGAGGAAACCACCTCTTCAAATAAGGACTTCCATGGCTCTTCCAAGGCCACAAGTTCAGATAAAAGATCAAATTGTAACTATTCTACTGGTTTTTCTGGATTAGGACATGACTCCACCACTCACAGCACTGGTAAAGGAGCCTTGTCAAGGTCATCAGAACAAGAAAGGAGAAAAGGAATTCCATGGACTGAGGAGGAGCACAGGTTATTTTTACTTGGTCTAGATAAGTTTGGAAAAGGAGATTGGAGAAGCATTTCAAGGAACTTTGTGATATCCAGGACTCCTACTCAAGTGGCAAGCCATGCACAGAAGTACTTCATAAGGTTGAATTCTATGAATAGGGACAGAAGAAGGTCTAGTATCCATGACATAACTAGTGTGAACAATGGAGATGTGGCTAGTAATCAAGCACCAATTACAGGACAACATAGCAGCACAGTTTCTTCAAGTACAATGGGTGTAGGACAATCACTGAAGCACAGAGTGCAGGGTCATATAGCACCTGGTTTAGGCATGTATGGAACACCAGTTGGACATCCTGTTGCTGCTCCTCCAGGGCACATGGCATCTGCAGTTGGAACTCCTGTCATGCTTCCTCCTGGACCCCATCCACCTTATGTTCTTCCTCTTGCTTACCCAATGGCACCTCCAACAATGCATCAATGA 888 0.4392 MSSSGSLWNYEEEKAFENAIAMHWIEEASNEQWEKIASAVPSKSMEEVKQHYQILVEDVSAIEAGHIPFPNYTSEETTSSNKDFHGSSKATSSDKRSNCNYSTGFSGLGHDSTTHSTGKGALSRSSEQERRKGIPWTEEEHRLFLLGLDKFGKGDWRSISRNFVISRTPTQVASHAQKYFIRLNSMNRDRRRSSIHDITSVNNGDVASNQAPITGQHSSTVSSSTMGVGQSLKHRVQGHIAPGLGMYGTPVGHPVAAPPGHMASAVGTPVMLPPGPHPPYVLPLAYPMAPPTMHQ* 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g2013 295 SUPERFAMILY Homeodomain-like 8 62 IPR009057 -
Vra7g2013 295 PANTHER TRANSCRIPTION FACTOR KUA1 1 294 - -
Vra7g2013 295 SMART sant 132 182 IPR001005 -
Vra7g2013 295 SMART sant 4 58 IPR001005 -
Vra7g2013 295 MobiDBLite consensus disorder prediction 200 225 - -
Vra7g2013 295 CDD SANT 8 53 IPR001005 -
Vra7g2013 295 PANTHER TRANSCRIPTION FACTOR MYBS1 1 294 - -
Vra7g2013 295 ProSiteProfiles Myb-like domain profile. 128 180 IPR001005 -
Vra7g2013 295 Pfam Myb-like DNA-binding domain 135 180 IPR001005 -
Vra7g2013 295 MobiDBLite consensus disorder prediction 72 123 - -
Vra7g2013 295 ProSiteProfiles SANT domain profile. 136 184 IPR017884 -
Vra7g2013 295 Gene3D - 1 69 - -
Vra7g2013 295 SUPERFAMILY Homeodomain-like 130 185 IPR009057 -
Vra7g2013 295 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 132 182 IPR006447 GO:0003677
Vra7g2013 295 CDD SANT 135 180 IPR001005 -
Vra7g2013 295 Gene3D - 134 186 - -
Vra7g2013 295 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 128 184 IPR017930 -
Vra7g2013 295 ProSiteProfiles Myb-like domain profile. 8 56 IPR001005 -
Vra7g2013 295 MobiDBLite consensus disorder prediction 72 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g2013 Vra-Chr7 39644666 39646264 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vra7g2013 Myb_DNA-binding 1.4e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g2013 - - vun:114176836 551.592
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2013 7 39644666 39646264 Vra7g2013 7 39644666 39646264 ECH