Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g2009 ATGTATTCCTCAAATACCTCCTTCAACGGCAATGACCTACTCTCGTACCCTAGCCAACCATTTTGCTTTAGGCCTTTTTCCTTTGAAAGCAACCCAACCAATTCTTCAAAACACCAATCCAATTCCAATTACGCCCTTCCTCCTCCTCTTCCTCCTCCTTTGTCCTTTCTTCAATCCTTTGACGAAAATATCTTTCTCGAACACCACCATGACTTTCTCTTACTTCACCCCTCTCTAGCCGACCCCGGACTCTCAAAAAACCTTCACGTTGCTCCCGAAATCCCCGCAATTCCCTCCTCTGGACAACCTGCCACTGCCCCTATGGACCACACTACAAGGAAGAGGTCCACCAAGAGAGATCGCCACAGCAAAATCAACACCGCACGAGGCCTCAGAGACCGAAGAATGAGGCTGTCCCTCGAAGTTGCAAAGAGGTTCTTCGGCTTGCAAGACATGCTAGGCTTTGACAAGGCCAGCAAAACCGTCGAGTGGCTACTGAACCAAGCAAAAGTCGAAATCAAACAACTTGCTAGGGAAAAAAACAGTGTTGGTGGTGCCAAGAGTGCATCATCAACTTCTGAATGCGAAGGGGTGTCTAGCTTGGACGAGGTTGTGGTCAGTGGAGTTAACGAGGAGCACGAGAAGGAGACACCCAACATGAAGAGAAGAACAAGTAAGGTTTGTAGAAAGAGGGAAAAGGCAAGAGAAAGGGCGAGAGAAAGAACAAGAGAGAAGATGAGGACTCGGAGAGTACTTGCTGCAGATGCTTCAAACCTTAACCGTTTGAGTTCTTGGAACCCCTTTGAAACGGTTGAAGACTCTGCGGCTACTCAGAGCCAAAGCGTGAACCACCCCTCCTTGGATGCGCACCTTCCTGAGACCGAAGAACCAAGTTCTCACGCAAAGGAACATTTGGGAACCGTGGAGGACATAGCGCGCCATGAAGACAATTCTTTGGTGATCATGAACAAGTGGAGCCCAACCATGATATTCAATTCTCTAAACAACTCGGCAATCCTTCACGAACATCAATTTGCAGAATTTCAGTCCTTGGGAAAACCTTGGGAAACCTACAACGATCACATCTAG 1089 0.4793 MYSSNTSFNGNDLLSYPSQPFCFRPFSFESNPTNSSKHQSNSNYALPPPLPPPLSFLQSFDENIFLEHHHDFLLLHPSLADPGLSKNLHVAPEIPAIPSSGQPATAPMDHTTRKRSTKRDRHSKINTARGLRDRRMRLSLEVAKRFFGLQDMLGFDKASKTVEWLLNQAKVEIKQLAREKNSVGGAKSASSTSECEGVSSLDEVVVSGVNEEHEKETPNMKRRTSKVCRKREKARERARERTREKMRTRRVLAADASNLNRLSSWNPFETVEDSAATQSQSVNHPSLDAHLPETEEPSSHAKEHLGTVEDIARHEDNSLVIMNKWSPTMIFNSLNNSAILHEHQFAEFQSLGKPWETYNDHI* 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g2009 362 MobiDBLite consensus disorder prediction 271 287 - -
Vra7g2009 362 MobiDBLite consensus disorder prediction 271 303 - -
Vra7g2009 362 MobiDBLite consensus disorder prediction 208 248 - -
Vra7g2009 362 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 14 333 IPR005333 GO:0003700
Vra7g2009 362 MobiDBLite consensus disorder prediction 96 124 - -
Vra7g2009 362 ProSiteProfiles TCP domain profile. 118 176 IPR017887 -
Vra7g2009 362 MobiDBLite consensus disorder prediction 231 248 - -
Vra7g2009 362 MobiDBLite consensus disorder prediction 289 303 - -
Vra7g2009 362 MobiDBLite consensus disorder prediction 208 223 - -
Vra7g2009 362 Pfam TCP family transcription factor 117 248 IPR017887 -
Vra7g2009 362 PANTHER TRANSCRIPTION FACTOR TCP18 14 333 - -
Vra7g2009 362 ProSiteProfiles R domain profile. 228 245 IPR017888 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g2009 Vra-Chr7 39598492 39600406 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g2009 56 187 TCP Transcription Factor Family AT1G68800 45.714 2.50e-26 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Vra7g2009 TCP 3.2e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g2009 - - vra:106767828 684.871
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g1205 4 19035879 19037816 Vra7g2009 7 39598492 39600406 ECH
Vra1g1200 1 16061571 16063522 Vra7g2009 7 39598492 39600406 ECH
Vra7g2009 7 39598492 39600406 Vra7g2009 7 39598492 39600406 ECH