Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g1990 ATGGAGCCTATGGACATAATCGGCAAATCAAAGGAAGATGCATCGCTTCCTAAAGTTTTCTCAACAATGACAAAAATTATTAAAGAAATGTTGCCCCCTGATGTACGTGTAGCAAGAGATGCCCAAGATCTATTGATCGAGTGTTGTGTAGAGTTTATAAACCTCATCTCATCAGAATCCAATGAAGTCTGCAACAGAGAGGAAAAACGGACAATCGCACCCGAGCATGTATTGAAGGCCCTACAGGTTCTTGGATTTGGTGAGTACATTGAAGAAGTTTATGCAGCATATGAACAACACAAAATGGAGACCATGCAGGACTCTTTAAAGGGTGGTAAATGGAGCAATGGAGCTGAGATGACCGAGGAAGAAGCATTAGCAGAGCAGCAAAGGATGTTTGCAGAGGCACGTGCTAGGATGAACGGTGGAGGCATTACTTCCAAGCAGCCAGATACTGACCAAAGTTTAGATAGCTGA 477 0.4319 MEPMDIIGKSKEDASLPKVFSTMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLISSESNEVCNREEKRTIAPEHVLKALQVLGFGEYIEEVYAAYEQHKMETMQDSLKGGKWSNGAEMTEEEALAEQQRMFAEARARMNGGGITSKQPDTDQSLDS* 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g1990 158 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 21 81 IPR003958 -
Vra7g1990 158 MobiDBLite consensus disorder prediction 139 158 - -
Vra7g1990 158 SUPERFAMILY Histone-fold 12 143 IPR009072 GO:0046982
Vra7g1990 158 PANTHER PROTEIN DR1 HOMOLOG 1 157 - -
Vra7g1990 158 PANTHER PROTEIN DR1 HOMOLOG 1 157 IPR044255 -
Vra7g1990 158 Gene3D Histone, subunit A 5 143 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g1990 Vra-Chr7 39427463 39432238 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g1990 1 154 CCAAT-DR1 Transcription Factor Family AT5G23090 82.051 2.35e-92 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Vra7g1990 CBFD_NFYB_HMF 2.3e-19 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g1990 K21751 - gmx:100807912 289.656
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g1990 7 39427463 39432238 Vra7g1990 7 39427463 39432238 ECH