Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g1989 ATGCAAAAAGGGAGCATAGAAAACCATCTATTTGGAAGGGGTTCTGCCGTTCAACCACTTCCTTGGGACATCAGGCTTAAGATAGCAATTGGAGTAGCTCGTGGTCTTGCATTCTTGCATACATCCGAGAAAGTAATTTACAGAGATTTTAAAGCCTCAAACATTCTGCTTGATGGGTCCTATAACGCCAAGATATCAGATTTTGGCTTGGCAAAGTTGGGTCCTTCAGCTAGTCAATCTCACGTGACAACAAGGGTGATGGGCACATACGGTTATGCAGCTCCTGAATATGTGGCCACAGGGCAACTATATGTCAAGAGTGATGTATACGGGTTTGGAGTTGTTTTGGTGGAAATACTAACAGGGCTACGACTACGAGCACTTGATTCGAACCGGCCAAGCGGGCAACATAATCTAACAGAGTGGGTGAAACCATACCTTCATGACCGAAGAAAGTTGAAGGGCATTATGGATTCTCGATTGGAAGGAAAGTTTCCATCGAAAGCTGCATTCCGTATAGCTCAGCTTGCTTTAAAATGTCTTGCATCTGAACCCAAACAGCGGCCATCAATGAAGGAGGTTTTGGAGAGTTTGGAGCGAATTCAAGCAGCCAATGAAAAGCCTGTGGAGCCTAAATTACNATCTAATCATNCTCGTCAAGCCCACCAGGCTGTGCACCATCGTTCTCCCCTTAAAGACGGTAGTTATTAG 711 0.4487 MQKGSIENHLFGRGSAVQPLPWDIRLKIAIGVARGLAFLHTSEKVIYRDFKASNILLDGSYNAKISDFGLAKLGPSASQSHVTTRVMGTYGYAAPEYVATGQLYVKSDVYGFGVVLVEILTGLRLRALDSNRPSGQHNLTEWVKPYLHDRRKLKGIMDSRLEGKFPSKAAFRIAQLALKCLASEPKQRPSMKEVLESLERIQAANEKPVEPKLXSNHXRQAHQAVHHRSPLKDGSY* 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g1989 236 MobiDBLite consensus disorder prediction 201 236 - -
Vra7g1989 236 Pfam Protein kinase domain 25 196 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra7g1989 236 SUPERFAMILY Protein kinase-like (PK-like) 1 221 IPR011009 -
Vra7g1989 236 PANTHER OS01G0588500 PROTEIN-RELATED 1 229 - -
Vra7g1989 236 PIRSF ILK 1 216 - -
Vra7g1989 236 PANTHER BNAA09G08980D PROTEIN 1 229 - -
Vra7g1989 236 ProSiteProfiles Protein kinase domain profile. 1 201 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra7g1989 236 Gene3D Transferase(Phosphotransferase) domain 1 1 225 - -
Vra7g1989 236 ProSitePatterns Serine/Threonine protein kinases active-site signature. 45 57 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g1989 Vra-Chr7 39415551 39418960 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g1989 3 206 Receptor kinase-like Gene Family AT4G02010 51.942 1.53e-68 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vra7g1989 Pkinase 5.3e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g1989 - - vun:114194495 450.284