Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g1983 ATGTATGCTAAAAATACTCTCATGGAAAACATAGAAAGCTCAGAACTTTCACAACAATCTCAAAACCCTATTGAAATAGACAAGCCCTATGAGAAGAGAGTGATGAAGATTGAAAAAGTAGGAAAAAAGATTGAGAAAAAGTATCTTGGGGTGAGACAAAGACCTTCAGGAAGGTGGATCGCTGAGATCAAGGATTCCTCACAGAAACTAAGGCTTTGGTTAGGAACTTTTGACAAAGCAGAAGAAGCTGCCTTCGCTTATGACTCTGCTGCAAGGCTTCTTAGAGGGAGAAATGCCAAAACAAACTTTCCAAACCCTGGAATCATCAACAATCATCAACAAGACTACACCATTTTGGGCAAGAATCCAAGGTCTTACCAACTTCTTAAGCATGCAGCTATGAAGAACCATGCACTTTCACCATCTCTTTATTCCACATTCATGCCCACCTGGAAAAACCAGATCATGATGAGAGATCAACATCACACCCTTGTCGAGGAAACTATAGTTTGTTCCATTCCTCAACAAGGCTCTGCCTGCTGTGGAATTTCTTTCGGAAGTTCTAAGGTTTATTCTTCTGTTGTTGTAGCTCCTTCTTTCAGTGTTTCTTCTCATGATGAAACCGCCTAA 630 0.4048 MYAKNTLMENIESSELSQQSQNPIEIDKPYEKRVMKIEKVGKKIEKKYLGVRQRPSGRWIAEIKDSSQKLRLWLGTFDKAEEAAFAYDSAARLLRGRNAKTNFPNPGIINNHQQDYTILGKNPRSYQLLKHAAMKNHALSPSLYSTFMPTWKNQIMMRDQHHTLVEETIVCSIPQQGSACCGISFGSSKVYSSVVVAPSFSVSSHDETA* 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g1983 209 SMART rav1_2 47 110 IPR001471 GO:0003700|GO:0006355
Vra7g1983 209 Pfam AP2 domain 47 96 IPR001471 GO:0003700|GO:0006355
Vra7g1983 209 ProSiteProfiles AP2/ERF domain profile. 47 104 IPR001471 GO:0003700|GO:0006355
Vra7g1983 209 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 8 207 - -
Vra7g1983 209 CDD AP2 46 105 IPR001471 GO:0003700|GO:0006355
Vra7g1983 209 PRINTS Ethylene responsive element binding protein signature 48 59 IPR001471 GO:0003700|GO:0006355
Vra7g1983 209 PRINTS Ethylene responsive element binding protein signature 70 86 IPR001471 GO:0003700|GO:0006355
Vra7g1983 209 MobiDBLite consensus disorder prediction 7 22 - -
Vra7g1983 209 MobiDBLite consensus disorder prediction 1 22 - -
Vra7g1983 209 Gene3D AP2/ERF domain 46 105 IPR036955 GO:0003700|GO:0006355
Vra7g1983 209 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF110-LIKE 8 207 - -
Vra7g1983 209 SUPERFAMILY DNA-binding domain 47 104 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g1983 Vra-Chr7 39354591 39355461 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g1983 36 105 AP2-EREBP Transcription Factor Family AT5G19790 62.857 4.26e-26 99.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vra7g1983 AP2 1.1e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g1983 - K09286 var:108340966 354.755
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g1983 7 39354591 39355461 Vra7g1983 7 39354591 39355461 ECH