Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g1977 ATGGCACAAGATACTGTTTTTGGTGCTGACTCACCTCGACGACGTCTATTGCGAGATCAAGTTCAAGTTGTTAAAAGAAAGGATTCTGATCGCTACGAAATTGTTCCTATCCAAGATTCCCTGTCATTTGAGAAAGGATTTTTCATATTCATTCGTGCGTGCCAATTACTGGCTCAAAAGAACGATGGAATCATATTAGTAGGAGTTGCAGGTCCATCTGGAGCAGGGAAAACTGTTTTCACTGAGAAGATCCTCAATTTTATGCCAAGCATAGCTGTCATAACAATGGACAATTATAACGATTCTAGTAGAATTATTGATGGAAACTTTGATGACCCTCGGTTGACGGATTATGATACCTTGCTTGAAAATATACAGGGTCTTAAAGCAGGGAAGCCTGTTCAAGTTCCAGTATATGATTTCAAGTCTAGTTCTCGCATAGGTTACAGGACTGTTGAAGTCCCTAGCTCTCGTATTGTAATCATAGAAGGCATCTATGCCTTAAGTGAAAAATTAAGACCTTTACTTGATCTTCGTGTTTCTGTCACTGGTGGAGTTCATTTTGACCTTGTTAAGCGTGTCTTACGGGACATTCACCGTGCTGGTCAAGAGCCTGAAGAAATAATTCATCAAATCTCTGAAACGGTATATCCTATGTATAAAGCTTATATTGAGCCAGATCTCCAAACAGCACATATAAAAGTCATAAACAAGTTTAATCCATTCTCTGGATTTCAAAATCCCACATATATATTGAAGTCAGCAAGAACTGTGACAGTTGATCAAATCAAGGAAATTATTGCTGCACAGCATACTGAAACCAAAGAGGAAACGTATGACATATTTCTTCTACCGCCTGGGGAAGACCCTGAAGCATGTCAATCATATTTGAGAATGAGAAACCGCGATGGAAAGTACAATCTCATGTTTGAGGAATGGGTGACAGATAGTCCATTCATAATATCTCCTCGAATTACTTTTGAGGTCAGTGTGCGCCTTCTTGGAGGACTGATGGCCTTAGGATACACAATTGCATCTATCCTGAAAAGAAGCAGCCATATCTTTCGTGATGATAAAGTGACCATTAAAACTGATTGGTTGGAACAACTGAATCGCACATATGTTCAGGTGCAAGGGAAAGACAGGAACTATTGCAAGTTTGTAGCAGAGAAACTGGGGTTGGATGGTTCCTATGTTTCTCGCACTTATATTGAACAAATTCAGCTAGAAAAGCTTGTGAACGATGTGATGGCATTGCCAGACGATCTTAAGTCAAAACTCAGCATAGATGATGACGTAGTTTCAAGCCCCAAAGAAGCCCTTTCCAGGGCTTCTGCAGATAGAAGAATGAAGTATCTTAATCGTGGTATTTCACACTCATATTCGACTCAAAGGGACAAGATTCTACCTAAGCTGACTAAACTTGCTATAAATAACAGAAGATTCGATGGAAGAACTCTGGAATCACCTGCATCGATTGCTAACCATGGGGTCATCACTCAACTTTCTGATCAAATTTCCACATTAAATGAAAGAATGGATGAATTCACCTCCCGTATTGAAGAATTGAATTCAAAGTTTGCTAGCAAAAAAGTTTCCGCCAGTCAACAAAACTTGGCTTCACAGGCTGAGGCCGGTAATGGCTCAGGCCCTACTTCCTTGTTTGTAACTGGATTAGGCAATGGTTCATTGACTGGATCATTGCTGCCTAATTCTTCATCATCTTCTCAATTGGCGAAAGAGTCTCCCCTGATGGACGAGGTATTAGTTATTGCACGGGGACAACGTCAAATCATGCATCAACTTGACACTCTGAGCAATCTTTTGCATGAATACTTTGGAGAACGGTCACGCCTTGGAAGACCAAATCAGACAGGTAGAATGCGAGAACCTGAATCTGTTGCCATCCCTATGGTTCTGACTCTGGTCATTGGTGTTGTTGGTGTGTTTTTGTTCAAGAGTGTGACATCCCAAAAGTAG 1980 0.4066 MAQDTVFGADSPRRRLLRDQVQVVKRKDSDRYEIVPIQDSLSFEKGFFIFIRACQLLAQKNDGIILVGVAGPSGAGKTVFTEKILNFMPSIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLENIQGLKAGKPVQVPVYDFKSSSRIGYRTVEVPSSRIVIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIHRAGQEPEEIIHQISETVYPMYKAYIEPDLQTAHIKVINKFNPFSGFQNPTYILKSARTVTVDQIKEIIAAQHTETKEETYDIFLLPPGEDPEACQSYLRMRNRDGKYNLMFEEWVTDSPFIISPRITFEVSVRLLGGLMALGYTIASILKRSSHIFRDDKVTIKTDWLEQLNRTYVQVQGKDRNYCKFVAEKLGLDGSYVSRTYIEQIQLEKLVNDVMALPDDLKSKLSIDDDVVSSPKEALSRASADRRMKYLNRGISHSYSTQRDKILPKLTKLAINNRRFDGRTLESPASIANHGVITQLSDQISTLNERMDEFTSRIEELNSKFASKKVSASQQNLASQAEAGNGSGPTSLFVTGLGNGSLTGSLLPNSSSSSQLAKESPLMDEVLVIARGQRQIMHQLDTLSNLLHEYFGERSRLGRPNQTGRMREPESVAIPMVLTLVIGVVGVFLFKSVTSQK* 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g1977 659 Coils Coil 499 526 - -
Vra7g1977 659 Pfam CYTH domain 270 403 IPR023577 -
Vra7g1977 659 Pfam Phosphoribulokinase / Uridine kinase family 67 235 IPR006083 GO:0005524|GO:0016301
Vra7g1977 659 PANTHER URIDINE-CYTIDINE KINASE C-LIKE ISOFORM X1 7 647 - -
Vra7g1977 659 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 29 234 IPR027417 -
Vra7g1977 659 Gene3D - 253 407 - -
Vra7g1977 659 Gene3D - 65 248 IPR027417 -
Vra7g1977 659 ProSiteProfiles CYTH domain profile. 247 409 IPR023577 -
Vra7g1977 659 SUPERFAMILY CYTH-like phosphatases 258 406 IPR033469 -
Vra7g1977 659 CDD UMPK_like 66 238 - -
Vra7g1977 659 PRINTS Uridine kinase signature 64 81 - -
Vra7g1977 659 PRINTS Uridine kinase signature 131 146 - -
Vra7g1977 659 PRINTS Uridine kinase signature 187 197 - -
Vra7g1977 659 PRINTS Uridine kinase signature 223 236 - -
Vra7g1977 659 PANTHER URIDINE KINASE 7 647 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g1977 Vra-Chr7 39285824 39296709 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g1977 66 320 PRT Gene Family AT5G40870 25.000 7.63e-18 85.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g1977 7 39285824 39296709 Vra7g1977 7 39285824 39296709 ECH
Vra7g0493 7 8208559 8234075 Vra7g1977 7 39285824 39296709 PCT