Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g1971 ATGGCAGATGTAACCACCTACCCCGGCCACCACCGCCACCCCGACGATGACCTGATTCCTTTCCCTTATTGGGACTTAGATTTAGATTTTGATTTTGACCCCGAATTCCACCGCAACCCTTTCTCCCTCACCGACCGCGAGAACCAAGTCAATTTTGTAATGGATCTCTTTCACCAGCGCGTTGAGCAATCGCAACTCACCGATCCCCTCTCTAACGACGCCTTTTTCGGCGTTATCGACGCCCTAGACGCCATCGACCTTAGCTTCCCCTCCGCCGACGACTTACTTGTCGAACGTCGGCTCTCCGTCGGATCTGACTCCGACGAATCGCTCTACCAGTCTGGAAACATCGATAGCGTGTTAGGGATCTGCACTCACTCGGAGGAAGAGTACAACGTGAACGACGACGTTTCGAACATCCCTCTCTGCTTGGACGCGCTTCAATTGGAAGACAACAGAGGCAGTTATGATGATTTCGAGTGGGAGGAAGTGGTCGATGAGAGAGAAGTTCTGAGCATGTTCGGCGACACCTCCGTTTCCGTCTCCGTGGGAATCGAAGAGGAGGCAGAGGAGGAAGTAGAATTTGAAATGGAGACCAACAATTTGGGGTGGCAGGTTCTGTTGAACGCCAATTTGGAGGGAACGAATTCCGAGCCTTATTTCGGAGACAACGAGGATTTCGTGTACGGCGCGGAGTACGAGATGTTCAGCCAATTAACCGACGTCGCCTTCGTCGGGCAGCCTCCGGCGTCCGTCTCCGCCGTGAGGAACCTGTCGGCGGTGGTCGTGAGCGCTGCTGACGTGGAAAACGAAAACGTGGTTTGCGCGGTCTGTAAGGAGGAGTTTAGGGTTGGGGAAGAGGTGAAGCAGTTGCCGTGTTCGCATCGTTATCACGGGGACTGCATTGTGCCGTGGTTGGGGATAAGGAACACGTGTCCCGTTTGTCGCTTTGAGTTTCCCACTGATGATGCTGATTATGAGCAGAGGAAGGCACATATATCTGTTATGTGA 1011 0.5331 MADVTTYPGHHRHPDDDLIPFPYWDLDLDFDFDPEFHRNPFSLTDRENQVNFVMDLFHQRVEQSQLTDPLSNDAFFGVIDALDAIDLSFPSADDLLVERRLSVGSDSDESLYQSGNIDSVLGICTHSEEEYNVNDDVSNIPLCLDALQLEDNRGSYDDFEWEEVVDEREVLSMFGDTSVSVSVGIEEEAEEEVEFEMETNNLGWQVLLNANLEGTNSEPYFGDNEDFVYGAEYEMFSQLTDVAFVGQPPASVSAVRNLSAVVVSAADVENENVVCAVCKEEFRVGEEVKQLPCSHRYHGDCIVPWLGIRNTCPVCRFEFPTDDADYEQRKAHISVM* 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g1971 336 SUPERFAMILY RING/U-box 267 322 - -
Vra7g1971 336 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 219 334 - -
Vra7g1971 336 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 14 73 - -
Vra7g1971 336 ProSiteProfiles Zinc finger RING-type profile. 275 316 IPR001841 -
Vra7g1971 336 CDD RING-H2_RNF126_like 275 316 - -
Vra7g1971 336 Pfam Ring finger domain 275 316 IPR001841 -
Vra7g1971 336 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 239 322 IPR013083 -
Vra7g1971 336 PANTHER - 219 334 - -
Vra7g1971 336 PANTHER - 14 73 - -
Vra7g1971 336 SMART ring_2 275 315 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g1971 Vra-Chr7 39213519 39214965 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g1971 234 331 C3H Transcription Factor Family AT3G02340 53.061 1.58e-31 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g1971 - - gmx:100794303 432.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g1971 7 39213519 39214965 Vra7g1971 7 39213519 39214965 ECH