Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g1970 ATGGGTTCGTCGTCGGCGTCGTCAAGTTCTCCAAAGAAGAGAGCAAAATCCCAAGTAGAGGAGGATGAGGACGACGAAGAGAGCGTTTGTTGCGGGATTTGCTACGCGGAGCGAGGGGTTTCGATCGCAGGGGAAATCGATTGCTGCAGCCACTACTTTTGCTTCGTCTGCATCATGGAATGGGCTAAGCACGAGTCTCGATGCCCAATTTGTCGCCAGAGATTCTCCAACGTTCGCAGGCTCCCCATGCACGGCGTATTTTCTTCCTCCCGGGACGTGAAGGTTCCTCATCGTGACCAGGCGTATCATCCTCACGGGAATGTGGCAATTGGTCCTGTCGATTCTTATGGTGAAACCAAATGTGGTGTTTGTCGTGCTGGGACAGATGAACATCTTCTACTACTTTGTGATCTTTGTGATTCTGCTTCACACACATACTGTGTTGGCCTGGGATATACTGTTCCTGAAGGTGATTGGTTTTGCCACGATTGTGCTATTTCCCGGGAGACCAATGCCAATGAAGAATCAGACCAACAATGTGTTGTGCCAGAGGCTGAGCCAAGTGAAACCGTTGATATCTTTGATATTGTGAGGGAAACAGGCAGTCGGGTGGTTAAAAGACCAAGGACATCTCCTTTACAACAGAACCTGTCATCTCCTTCTGCTATTCCTTTATCAGATAGGTTAAGTAGATTCAAAGGAAAAAGTCCTGCCAAAGGTGTCAATAGTATGCAGCGTAATATTAAGGCGTTTCGTGAGAACTGGAATGCTTTGAGGAGTGGTTCATTACGGTTCCATTGTGATGCAGATCAAGCCAGCAGTACGGTTAGTCAAAAGCAAGATTCTAGATCATTATCACATGGAAAACTGTATGATTCACATTCTGGGACTTCCACAAGCGTGCAGCAATCCACTGTCCAGGGTGGTCCTTCTTCTGGCAAAACGTTGAATGAGAGAGTCTTTAAAGATAATGTTGAGAAGGCTTGGAAAATGGTGGACAGAGCAAAGAGGAAGCAAGCAACTCCTCAGAGAATTAGAAGCAATCGGCAGGGAGTAGATAGACCCTCATGTAGTGGAGCTCGTAAAACATCAGTTGAACGCTCTAATTTCCCAGAACTGAAAGATCAACATTCCAAAGAATTAAACTTAAGGAACACTGCGAAAGAGAAGCAGTGTGACTATTCTAGACTCTTCCAGAATTTCAAAAATTGCTCAACTCTAAAGTTGGAAGAGAAAAAGAAAAGTAGAGTTAGATGTGAGGAGATGATACACCGTGTAAGGGACCATAATACTCATTCAGAAGGATATTGTGAAAGCCCATTGTCTAGAAAGGTCCCTACTAATATCCAGGGTGGTGCTCCATTTCGTGAAGAAGAGAGAAATGCTTGCCAGGTAACCTCGGTAGATTTAGCTTCCTCGCGTGGCAAGTTTGTTAGTAACCTCTCCCCTTGTAAGGACGTGGATCTTGTCAATGAAGAAAAGAAATTAGCTGGTAGTCTCGAGGATGGAAGCACAGGAAAAACTGACGATGCAAAAACTGAGATCCAGTCTCTTGTCAAATTGAATCTGAAGCTCTTAACCAGAGATAAAAAATTAGGTTTTGATACCTTCAAGGTAGTTGCTAGGCAGGCTACCCATACCATCTTAGCTGCCTGCAGTTCTGAGCAGCAAAAGTGCAGCACATCCTCCTCTTGCTCAGTATGCTGTCATTCCGACAATACTCCTCAGTTTCAGAAATCTACTTTAATGCCTAATTGTTGCAGGCAATGCTTTTACGCCTTTGTAAACAACGTTGTCAGTTCCACCATGATGGAGAAAGTGGGTTGTGCTTGA 1833 0.4479 MGSSSASSSSPKKRAKSQVEEDEDDEESVCCGICYAERGVSIAGEIDCCSHYFCFVCIMEWAKHESRCPICRQRFSNVRRLPMHGVFSSSRDVKVPHRDQAYHPHGNVAIGPVDSYGETKCGVCRAGTDEHLLLLCDLCDSASHTYCVGLGYTVPEGDWFCHDCAISRETNANEESDQQCVVPEAEPSETVDIFDIVRETGSRVVKRPRTSPLQQNLSSPSAIPLSDRLSRFKGKSPAKGVNSMQRNIKAFRENWNALRSGSLRFHCDADQASSTVSQKQDSRSLSHGKLYDSHSGTSTSVQQSTVQGGPSSGKTLNERVFKDNVEKAWKMVDRAKRKQATPQRIRSNRQGVDRPSCSGARKTSVERSNFPELKDQHSKELNLRNTAKEKQCDYSRLFQNFKNCSTLKLEEKKKSRVRCEEMIHRVRDHNTHSEGYCESPLSRKVPTNIQGGAPFREEERNACQVTSVDLASSRGKFVSNLSPCKDVDLVNEEKKLAGSLEDGSTGKTDDAKTEIQSLVKLNLKLLTRDKKLGFDTFKVVARQATHTILAACSSEQQKCSTSSSCSVCCHSDNTPQFQKSTLMPNCCRQCFYAFVNNVVSSTMMEKVGCA* 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g1970 610 MobiDBLite consensus disorder prediction 1 20 - -
Vra7g1970 610 ProSiteProfiles Zinc finger PHD-type profile. 118 167 IPR019787 -
Vra7g1970 610 SMART PHD_3 120 165 IPR001965 -
Vra7g1970 610 ProSitePatterns Zinc finger RING-type signature. 49 58 IPR017907 -
Vra7g1970 610 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 113 186 IPR013083 -
Vra7g1970 610 SMART ring_2 31 71 IPR001841 -
Vra7g1970 610 Pfam Ring finger domain 31 72 IPR001841 -
Vra7g1970 610 PANTHER PHD-FINGER FAMILY PROTEIN 4 610 - -
Vra7g1970 610 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 8 95 IPR013083 -
Vra7g1970 610 ProSiteProfiles Zinc finger RING-type profile. 31 72 IPR001841 -
Vra7g1970 610 MobiDBLite consensus disorder prediction 367 384 - -
Vra7g1970 610 SUPERFAMILY RING/U-box 20 79 - -
Vra7g1970 610 MobiDBLite consensus disorder prediction 334 384 - -
Vra7g1970 610 Pfam PHD-finger 121 165 IPR019787 -
Vra7g1970 610 SUPERFAMILY FYVE/PHD zinc finger 113 166 IPR011011 -
Vra7g1970 610 PANTHER HISTONE ACETYLTRANSFERASE 4 610 - -
Vra7g1970 610 MobiDBLite consensus disorder prediction 274 316 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g1970 Vra-Chr7 39186070 39194838 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g1970 112 168 C2H2 Transcription Factor Family AT3G01460 37.931 7.42e-08 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vra7g1970 PHD 1.3e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g1970 - - gmx:100808541 872.078
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g1970 7 39186070 39194838 Vra7g1970 7 39186070 39194838 ECH