Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g1969 ATGACAGCCAACGGAGGGAGTTGTCTGAAGACTCATGATTTCCTGCAGCCACTGGAGCGGCTAGAGACGAAGGGGAGTGCGAAGGAAGAAGCCACAGATGAAATATCGTGGGTCGTTGAGAAGGCAGGACCTTCGGTTGAGCACCTCTTACCTGGAGGAATTGGGACTTACAGCATTAACCACATTTCGTATGTTAATAATAACAATAATAATAATAATCAAAGGCTTCCCAAAGCAGAGACGTCTCTTTTTGCGCGTCAGGCAACTAGTACGGACAGGAACGATGAAAACTCCAACTGCAGTTCGTATACTACTTCGAGCGGTTTCACTTTGTGGGAAGACTCATCGGGGAAGAGGGGCAAAACAGGAAAGGAGAATAATTCGGGCGACAGACCCTCTACTGGAGAGTGTGCGGCTACAAAGCTAGGGCAGTGGACATCAACGGAGCGGACCTCACAGTCGTTTTGTACCAATCGTCACGACAGCTTCAGCTCTCGCTCTTCATCTCAGACAACTGGGCAGAAGAACCAGAGTTTTATGGAAATGATGAAGTCCGCAAGGGATAGTGCCCAGGATGAAGTGCTGGAGAACGAAGAAACATTTTTTCTCAAGAAAGAACCTTCCAATAACCAAAGAGAGCTGAGGGTGAAAGTGGATGGTAAGAGTACCGATCAAAAACCAAATACGCCAAGATCAAAACACTCTGCAACAGAACAGCGGAGAAGGAGTAAAATTAATGACAGATTCCAAATGCTAAGAGAGCTTATTCCACACAGTGACCAAAAGAGGGACAAAGCATCTTTTTTATTAGAGGTCATTGAGTATATTCATTTTTTACAAGAGAAGGTGCACAAGTATGAAGGTTCATTTCAAGGGTGGAGTAACGAGCAAGAAAAATTGATGCCATGGAGAAATAATGACAAGCCAGCAGAAAACTTCCAACATCGTGGCACTGATAATGGGTCAAGTCCATCTCCAGTACTGCTTTTTTCTTCAAAGAATGAGGAGAAAAATATTAGCATCTCCCCAACAATTCCTGGGAGTACCCAGAATGTAGAATCTGGCTTTAGTACAGCAACTACCTCCAAGACAATGGACCATCAGGCCGGAATAGTGAACAAGGCTTTTCCAATTCCTATTTCTTCACAGCTAAATTTCTTCCCTCCAGCCCAAATGGGTGGTCCAGGTGGAGTAGTGTCTCAGATCGCACATATACCGGTTTCTGATGCCGAGAACAAATATCAACCTTCAGTGGAGTGTCAGACCATGGCGGCTACCAGTGAAAAGCTGAAAGAGAAAGAGCTCGCTATTGAAGGTGGTGCAATTAGCATATCAAGTGTGTACTCAAAAGGGTTGCTGCATACGCTTACACATGCACTGCAAAGTTCAGGGGTGGATCTGTCACAGGCTAGCATCTCAGTGCAAATTGAACTTGGTAAACAAGCAAACATCAGACCAACTGTACCCGTGTCAGTGTGTGGTGCTAAGGATGGTGAAGTACCTTCTAACAACAATCAAAAGATGATGCGCTCTAGAGTTGCTAGCTCAGGGAAGTCTGACCAAGCAATTAAGAAGCTAAAGATCTGCAGAAATTAA 1596 0.448 MTANGGSCLKTHDFLQPLERLETKGSAKEEATDEISWVVEKAGPSVEHLLPGGIGTYSINHISYVNNNNNNNNQRLPKAETSLFARQATSTDRNDENSNCSSYTTSSGFTLWEDSSGKRGKTGKENNSGDRPSTGECAATKLGQWTSTERTSQSFCTNRHDSFSSRSSSQTTGQKNQSFMEMMKSARDSAQDEVLENEETFFLKKEPSNNQRELRVKVDGKSTDQKPNTPRSKHSATEQRRRSKINDRFQMLRELIPHSDQKRDKASFLLEVIEYIHFLQEKVHKYEGSFQGWSNEQEKLMPWRNNDKPAENFQHRGTDNGSSPSPVLLFSSKNEEKNISISPTIPGSTQNVESGFSTATTSKTMDHQAGIVNKAFPIPISSQLNFFPPAQMGGPGGVVSQIAHIPVSDAENKYQPSVECQTMAATSEKLKEKELAIEGGAISISSVYSKGLLHTLTHALQSSGVDLSQASISVQIELGKQANIRPTVPVSVCGAKDGEVPSNNNQKMMRSRVASSGKSDQAIKKLKICRN* 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g1969 531 MobiDBLite consensus disorder prediction 496 518 - -
Vra7g1969 531 Gene3D - 226 301 IPR036638 GO:0046983
Vra7g1969 531 MobiDBLite consensus disorder prediction 127 177 - -
Vra7g1969 531 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 6 528 IPR044295 GO:0003700|GO:0006351|GO:0046983
Vra7g1969 531 Pfam Helix-loop-helix DNA-binding domain 231 280 IPR011598 GO:0046983
Vra7g1969 531 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 227 300 IPR036638 GO:0046983
Vra7g1969 531 PANTHER TRANSCRIPTION FACTOR BIM1 6 528 - -
Vra7g1969 531 SMART finulus 235 285 IPR011598 GO:0046983
Vra7g1969 531 MobiDBLite consensus disorder prediction 111 177 - -
Vra7g1969 531 MobiDBLite consensus disorder prediction 201 245 - -
Vra7g1969 531 CDD bHLH_AtBIM_like 228 304 - -
Vra7g1969 531 MobiDBLite consensus disorder prediction 498 518 - -
Vra7g1969 531 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 229 279 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g1969 Vra-Chr7 39171317 39177950 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g1969 6 482 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G08130 44.869 1.83e-105 324
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vra7g1969 HLH 4.5e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g1969 - - gmx:100808016 829.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g1969 7 39171317 39177950 Vra7g1969 7 39171317 39177950 ECH