Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g1961 ATGGGAAGGGGAAGAGTGGAGTTGAAAAGGATCGAAAACAAGATCAACAGGCAAGTCACCTTCTCAAAGAGAAGATCTGGTTTGATCAAGAAAGCCCGCGAGATCTCTGTGCTTTGCGATGCTGATGTGGCTCTCATAGTCTTCTCTACTAAAGGCAAGCTTTTGGAATACTCTAACCACCCTTCTATGGAAAGAATTCTTGAACGGTATGAGAGGCATTCGTATGCGGAGAAGCAAGAAGGTGCAGGTGATCAACCACCAAATGAAAACTGGGCTATAGAACACGAAAAATTGAAGGCTAGGGTGGAGGTACTACAGCGACATCAAAGGAATTTCATGGGAGAAGAGCTTGATAACATAAATCTTAGAGGACTTCAGAGTTTAGAACAACAACTTGATTCCGCCCTCAAACACATTAGATCACGAAAGAACCAAGCCATGCATGAATCTATTTCAGAGCTTCAGAAAAAGGATAAGGCTCTTCGGGAACGTAACAACTTGCTCGCCAAGAAGATAAAAGAAAAAGAGAAGGCACTGGAGTCCCTGAGTATTGGAGGTTCCCCAGAAGCGAGATGTAATGAAAGAACTCCAACATCAACTCAACCTAAAACCATAATTCCTCCTTGGATGATGACTCTTCCTACACATGAATAG 654 0.4297 MGRGRVELKRIENKINRQVTFSKRRSGLIKKAREISVLCDADVALIVFSTKGKLLEYSNHPSMERILERYERHSYAEKQEGAGDQPPNENWAIEHEKLKARVEVLQRHQRNFMGEELDNINLRGLQSLEQQLDSALKHIRSRKNQAMHESISELQKKDKALRERNNLLAKKIKEKEKALESLSIGGSPEARCNERTPTSTQPKTIIPPWMMTLPTHE* 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g1961 217 Coils Coil 151 177 - -
Vra7g1961 217 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL8 1 186 - -
Vra7g1961 217 Gene3D - 13 84 IPR036879 GO:0003677|GO:0046983
Vra7g1961 217 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vra7g1961 217 MobiDBLite consensus disorder prediction 180 206 - -
Vra7g1961 217 CDD MADS_MEF2_like 2 79 IPR033896 GO:0000977|GO:0045944
Vra7g1961 217 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vra7g1961 217 SUPERFAMILY SRF-like 2 91 IPR036879 GO:0003677|GO:0046983
Vra7g1961 217 Coils Coil 216 217 - -
Vra7g1961 217 Coils Coil 88 108 - -
Vra7g1961 217 PANTHER MADS BOX PROTEIN 1 186 - -
Vra7g1961 217 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vra7g1961 217 MobiDBLite consensus disorder prediction 192 206 - -
Vra7g1961 217 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vra7g1961 217 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vra7g1961 217 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vra7g1961 217 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vra7g1961 217 Pfam K-box region 87 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vra7g1961 217 Coils Coil 125 145 - -
Vra7g1961 217 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g1961 Vra-Chr7 39097684 39102896 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g1961 1 181 MADS-box Gene Family AT1G26310 63.934 2.77e-80 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vra7g1961 K-box 1.8e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g1961 K09264 - gmx:100798351 329.331
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g1143 4 18499072 18506003 Vra7g1961 7 39097684 39102896 ECH
Vra1g0932 1 10915639 10921537 Vra7g1961 7 39097684 39102896 ECH
Vra7g1961 7 39097684 39102896 Vra7g1961 7 39097684 39102896 ECH
Vra7g1961 7 39097684 39102896 Vra2g1605 2 24043194 24051500 PCT