Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g1959 ATGGAATCTTGGAGCTTTGTCCCTGAAGAAAAGGAGAGTGTCTCCAATGAGGCACTATCCCCTCCCAACACTCTCGGGAGGACCATAAATTCTTTCTTGGGCTGGGAACTAAAAACCCCATGTGGTTTTTCCAACGACATGTTGGGTTTGGGTCAGCACCCCATTGAGAATCAAGGTTTTGAAGAATTGGGTTTTCCTGAAATGTTGGGCAAACACTTGTCCGATGATCTAATTGCTAGTGTTTCAAGCAGAAAGGTGGATGCTGGTAGACATCAACAGCACCAACACAGTGACAGAATCACTGGAACTGTTGTGGATGCCCCAAGTGGCTTTTCTCAAAGAGGGGACTCAAATTCCAAGCTTTCAAACTCAAATTCCCTCATTGATTTGAAACTGGGTCGATTTGCTGACCATGGAGATGCCATTGATGCGGGGTTTTCCAAAGTTTTGTCTTCTTCCGAGTCATCAACGCCTCCCAAGAGAGTGAGAGTTTCGGGGGTTCACTCGCAGACTGCTTATTGCCAAGTCTATGGCTGTAACAAGGATCTCAGCTCCTGCAAAGATTACCACAAGAGGCACAAAGTGTGTGAGGTTCACTCCAAGACTGCTACCGTTATAGTCAATGGTATTGAGCAAAGGTTTTGCCAGCAATGTAGTAGGTTTCATTTGCTGGCTGAATTTGATGATGGTAAGCGAAGCTGCCGTAAACGCCTTGCAGGTCATAATGAGCGTAGAAGAAAGCCACAAATGGGGATTCACCCCGGAAAGTCTGGGAGGTTGCTTCAGCCATGTGGGGATAGCAGATTCCAGGGATCCATGCTAACATCATCCTTTATCCGCCCAGAGATGCTTCCTAGTGGGGTCATGTGTTCTGAGAAATATGGTGTGAGTAGCTTCTGGCGACCTATCAAAGCTGAACACGGGACTGGTTTTAGGCATCTTTCTTCTATGCCTGTATCCAATGGACATCCTCAGTCAAGATCTTTGTTCCCATCATATAACGGAAAACAATTTCCTTTTCTTCATGAAAATTGTGCAACGTCCACCACAGGAAGCATCTTCTGTGAGAGCAATAGCCACTATCCACCTGCCCTTGGGGCACAAAATTCTGGGTTAAGACCACTATTCCAGGATACCATAGGAAATGAGGACTTCAATGTTTTTGATACAGCATCAACTGTTCAAGGATTATCGGGGATTTCAGACTCTTGTTGTGCTCTCTCTCTTCTGTCATCTCAATCCCAGAACTCTTCAAGCCAATCATCAGGAATTCCCTTGGCTCACTCCATGGTTATTCCAAGCGGTCATGGCCATCACTACAACATGAGTCAGGTCTCTGAAAAGATAGGAATAAGCTCACAGACTTCTTCAAGCCGAGTGTCAGATAGTTTTCCTTCAGAACTAAATCATGCAGATGGAAGTCATCTCAGTCCTGTGTTAATATCAGACCATAATGATATTGTAAACTTTGATATGGCAGATGGTATATTCCATGGTTCAGAATTCATGAATGTTAAGGATCGACTTCCCTGCGAAGATGGTGCAACCATAGACTTGCTACAATTGTCATCACAGCTTCAGCGAGTTGAGCATGAGAGGCAATCCTTGCAGGTGAAGCAGGAGAATGATTCTTCTTGCACACTGCGGATTACATAA 1656 0.4493 MESWSFVPEEKESVSNEALSPPNTLGRTINSFLGWELKTPCGFSNDMLGLGQHPIENQGFEELGFPEMLGKHLSDDLIASVSSRKVDAGRHQQHQHSDRITGTVVDAPSGFSQRGDSNSKLSNSNSLIDLKLGRFADHGDAIDAGFSKVLSSSESSTPPKRVRVSGVHSQTAYCQVYGCNKDLSSCKDYHKRHKVCEVHSKTATVIVNGIEQRFCQQCSRFHLLAEFDDGKRSCRKRLAGHNERRRKPQMGIHPGKSGRLLQPCGDSRFQGSMLTSSFIRPEMLPSGVMCSEKYGVSSFWRPIKAEHGTGFRHLSSMPVSNGHPQSRSLFPSYNGKQFPFLHENCATSTTGSIFCESNSHYPPALGAQNSGLRPLFQDTIGNEDFNVFDTASTVQGLSGISDSCCALSLLSSQSQNSSSQSSGIPLAHSMVIPSGHGHHYNMSQVSEKIGISSQTSSSRVSDSFPSELNHADGSHLSPVLISDHNDIVNFDMADGIFHGSEFMNVKDRLPCEDGATIDLLQLSSQLQRVEHERQSLQVKQENDSSCTLRIT* 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g1959 551 MobiDBLite consensus disorder prediction 98 120 - -
Vra7g1959 551 Gene3D - 164 235 IPR036893 GO:0003677|GO:0005634
Vra7g1959 551 MobiDBLite consensus disorder prediction 1 20 - -
Vra7g1959 551 SUPERFAMILY SBT domain 172 251 IPR036893 GO:0003677|GO:0005634
Vra7g1959 551 PANTHER 1 PROTEIN, PUTATIVE-RELATED 42 551 - -
Vra7g1959 551 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 42 551 IPR044817 GO:0003677
Vra7g1959 551 Coils Coil 519 539 - -
Vra7g1959 551 MobiDBLite consensus disorder prediction 89 120 - -
Vra7g1959 551 Pfam SBP domain 174 247 IPR004333 GO:0003677
Vra7g1959 551 ProSiteProfiles Zinc finger SBP-type profile. 171 248 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g1959 Vra-Chr7 39057202 39062216 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g1959 128 289 SBP-box Gene Family AT1G69170 56.173 1.23e-53 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Vra7g1959 SBP 4.5e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g1959 - - gmx:100817547 959.518
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g1959 7 39057202 39062216 Vra7g1959 7 39057202 39062216 ECH