Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g1956 ATGAACGGATTAAGAAGTGAACGAGCTCCTCTCTTGGAATCTCAGCGTGGCGGACGAGGAAAGAGGGATGGTGGCTCGGAAGATCAAGTCTCAGACCTTGAACACGGTGACGCAGTGCCGGCGGCGAATGTGGGATTCTGTCGAGTGTTTTCACTCGCAAAACCTGAGGCTGGAAAGCTGGTGATCGGTACTGTGGCTCTTCTGATTGCAGCCACATCAAGTATCTTAGTTCAAAAATTTGGTGGGAAAATAATTGACATTGTCTCCGGGGATCTCCGGACTCCAAAGGAGAGAGATGAAGCTTTGGATGCTGTTAAGAGCACCATACTAGAAATCTTTCTGATAGTTGTCTTTGGATCAATTTGCACTGCACTTCGAGCCTGGCTTTTTTATACTGCCAGTGAAAGGGTTGTTGCACGGTTGAGAAAGAATTTGTTCAGTCACCTGGTAAACCAGGAGATAGCTTTCTTTGATGTTACTCGAACCGGGGAACTTTTAAGTAGGCTATCTGAAGATACACAGATCATAAAGAATGCTGCGACTACCAATCTTTCTGAGGCCCTGAGAAACTTTTCAACTGCATTTATTGGTTTGAGCTTCATGTTTGCAACGTCATGGAAGTTAACGTTGTTGGCTTTGGCTGTTGTACCTGTTCTTTCCGTTGCTGTTCGCAAGTTTGGCCGTTACCTGCGTGAACTTTCTCATAAAACTCAAGCTGCTGCTGCATTAGCTTCATCAATTGCGGAGGAATCCTTTGGTGCAATAAGAACAGTAAGATCATTTGCCCAAGAAGATTTTGAAATAACGCGCTACTCAGAGAAAGTTAATGAAACACTCAGTCTTGGACTTAAACAAGCTAAAGTTGTTGGACTCTTTTCTGGAGGCCTTAATGCTGCATCTACACTTTCAGTTATCGTAGTTGTTATATATGGAGCTAATTTGACAATCAGGGGTAATATGTCCTCTGGTGATCTTACATCTTTCATTCTTTATAGTCTCTCAGTGGGTTCTTCTATATCTGGTCTGTCAGGATTGTATACAGTAGTTATGAAAGCTGCCGGTGCTAGCAGAAGGGTATTTCAACTTTTGGATCGTACCTCATCCATGCCAGAGCCAGGAAGTAAATGTCCACTGGGTGATCAAGATGGGGAAGTAGAACTAGATGATGTGTGGTTTGCCTATCCATCACGCCCTAATCATCCAGTGCTCAAGGGCATTACGTTGAAATTGCATCCTGGATCAAAGGTTGCTCTTGTTGGTCCAAGTGGTGGTGGAAAGAGTACAATTGCGAACTTAATTGAAAGATTTTACGACCCAACCAAGGGAAAGATTCTACTGAATGGGGTTCCTTTGGTAGAAATATCACACAAGCATTTACACAGAAAGATCAGTATAGTGAGTCAGGAGCCTACACTCTTCAACTGTTCCATAGAGGAGAACATAGCTTATGGATTTGATGGCAAAGTGGACCCTGTTGATTTAGAGAATGCTTCTAAAATGGCCAATGCACATGAATTTATATCAAAGTTCCCAGAGAAATACCAGACCTTTGTTGGAGAGCGTGGGGTAAGGCTTTCTGGTGGGCAGAAACAGAGAATAGCAATTGCTAGAGCCCTTCTTATGAACCCAAAAATTCTCCTCTTGGATGAAGCTACCAGTGCCCTAGATGCTGAAAGTGAATACCTAGTGCAGGATGCCATGGAGTCTCTCATGAAAGGAAGAACAGTTCTAGTCATTGCTCATAGGTTATCAACTGTTAAAACTGCTAACACCGTTGCAGTTGTATCTGATGGCCAAATAGTTGAGAGTGGCACCCATGATGAGCTTCTTAGCAAGGAAGGTGTCTATACTGCATTAGTCAAGAGACAACTACAAACAACAACAAAAGTCGAAATCTAG 1899 0.4318 MNGLRSERAPLLESQRGGRGKRDGGSEDQVSDLEHGDAVPAANVGFCRVFSLAKPEAGKLVIGTVALLIAATSSILVQKFGGKIIDIVSGDLRTPKERDEALDAVKSTILEIFLIVVFGSICTALRAWLFYTASERVVARLRKNLFSHLVNQEIAFFDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNFSTAFIGLSFMFATSWKLTLLALAVVPVLSVAVRKFGRYLRELSHKTQAAAALASSIAEESFGAIRTVRSFAQEDFEITRYSEKVNETLSLGLKQAKVVGLFSGGLNAASTLSVIVVVIYGANLTIRGNMSSGDLTSFILYSLSVGSSISGLSGLYTVVMKAAGASRRVFQLLDRTSSMPEPGSKCPLGDQDGEVELDDVWFAYPSRPNHPVLKGITLKLHPGSKVALVGPSGGGKSTIANLIERFYDPTKGKILLNGVPLVEISHKHLHRKISIVSQEPTLFNCSIEENIAYGFDGKVDPVDLENASKMANAHEFISKFPEKYQTFVGERGVRLSGGQKQRIAIARALLMNPKILLLDEATSALDAESEYLVQDAMESLMKGRTVLVIAHRLSTVKTANTVAVVSDGQIVESGTHDELLSKEGVYTALVKRQLQTTTKVEI* 633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g1956 632 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 385 622 IPR003439 GO:0005524
Vra7g1956 632 CDD ABC_MTABC3_MDL1_MDL2 385 623 - -
Vra7g1956 632 CDD ABC_6TM_AtABCB27_like 63 359 - -
Vra7g1956 632 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 3 627 IPR039421 -
Vra7g1956 632 PANTHER ABC TRANSPORTER B FAMILY MEMBER 25 3 627 - -
Vra7g1956 632 PIRSF ABC_prm/ATPase_B 13 631 - -
Vra7g1956 632 Gene3D - 379 628 IPR027417 -
Vra7g1956 632 SUPERFAMILY ABC transporter transmembrane region 48 366 IPR036640 GO:0005524|GO:0016021
Vra7g1956 632 Pfam ABC transporter transmembrane region 60 333 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vra7g1956 632 ProSitePatterns ABC transporters family signature. 525 539 IPR017871 GO:0005524
Vra7g1956 632 Gene3D ABC transporter type 1, transmembrane domain 37 365 IPR036640 GO:0005524|GO:0016021
Vra7g1956 632 MobiDBLite consensus disorder prediction 1 32 - -
Vra7g1956 632 Pfam ABC transporter 403 553 IPR003439 GO:0005524
Vra7g1956 632 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 377 623 IPR027417 -
Vra7g1956 632 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 61 351 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vra7g1956 632 MobiDBLite consensus disorder prediction 12 32 - -
Vra7g1956 632 SMART AAA_5 412 606 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g1956 Vra-Chr7 39019060 39026890 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g1956 46 630 Calmodulin-binding Proteins AT2G36910 32.998 3.36e-91 305
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g1956 - - var:108320153 1174.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g1956 7 39019060 39026890 Vra7g1956 7 39019060 39026890 ECH