Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g1942 ATGGCTTTCTTTGGTAGACTTGGGAATTTGTTAAGACAGACTGCTAGCAGACAGGTTAGTTCAGAGTTGCGGTCATCCCCTTCCTTATTCCAGGCTATACGCTGTCTGTCTTCTGCTCCAAGCTCCAAGCTGTTTATAGGAGGTGTTTCGTTTTCCACTGATGAGCAAAGCTTGAGGGAAACTTTTGCAAAATATGGTGAAGTTGTTGATGCAAGGATCATTATGGATCGTGAAACTGGAAGATCCAGGGGGTTTGGATTTGTTACATACACGTCTGTTGAGGAGGCATCGAGTGCTATTCAGGCCTTGGATGGTCAGGACCTTCATGGTCGCCAGATTAGGGTAAATTATGCTAATGAAAGACCGCGAGGTGGTGGCTATGGCGGTGGATATGGTGGTGGATTTGGCGCTGGAGGTGGTGGTGGCTATGGAGGTGCATATGGTGGTGGTGGTGGCGGCTATGGTGGAAATGCTGGAGGTGGTTATGGTGGTGGCGGTTATGGTGGAAATGCTGGAGGTGGTGGCTATGGTGGAAATGCTGGAGGTGGTTATGGCGGTGGTAGCTATGGTGGAAATGCTGGTGGTGGTTATGTATCAGGTGGCAATTTTGGGGACAGTGGCTCTGGGAATAGCTATCCTGCTGCTGACAGTTTTGGGACTAGTGGTGCTGGTGGCAGCTACAGTGGGAATTTTGGTGATGCTGGTGGAATAGGAAATCATGAAAGCTCTGCTGGTTTTGGCAGTAGTGGATATGATGGAAGTGCTGTGGATGGTAGCGGGGCAAGTACTGGAACCAGCTTTGCTGATGGAAGTGGAGGGTTAGGCGGCGGTCAATTTGATAGCAAAGCAAGCAGCAATGGAGATGAGGATTTTGGAGATTACAGGGATGACACTGACGATACTGATAATTTTGCCAAAAGGGCTTGA 927 0.4908 MAFFGRLGNLLRQTASRQVSSELRSSPSLFQAIRCLSSAPSSKLFIGGVSFSTDEQSLRETFAKYGEVVDARIIMDRETGRSRGFGFVTYTSVEEASSAIQALDGQDLHGRQIRVNYANERPRGGGYGGGYGGGFGAGGGGGYGGAYGGGGGGYGGNAGGGYGGGGYGGNAGGGGYGGNAGGGYGGGSYGGNAGGGYVSGGNFGDSGSGNSYPAADSFGTSGAGGSYSGNFGDAGGIGNHESSAGFGSSGYDGSAVDGSGASTGTSFADGSGGLGGGQFDSKASSNGDEDFGDYRDDTDDTDNFAKRA* 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g1942 308 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 44 114 IPR000504 GO:0003723
Vra7g1942 308 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN 3 MITOCHONDRIAL 1 177 - -
Vra7g1942 308 MobiDBLite consensus disorder prediction 242 308 - -
Vra7g1942 308 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 42 120 IPR000504 GO:0003723
Vra7g1942 308 SMART rrm1_1 43 116 IPR000504 GO:0003723
Vra7g1942 308 Gene3D - 12 138 IPR012677 -
Vra7g1942 308 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 1 177 - -
Vra7g1942 308 SUPERFAMILY RNA-binding domain, RBD 39 152 IPR035979 GO:0003676
Vra7g1942 308 MobiDBLite consensus disorder prediction 242 269 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g1942 Vra-Chr7 38918302 38921759 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g1942 39 184 Eukaryotic Initiation Factors Gene Family AT2G36660 25.161 4.22e-11 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g1942 K12741 - gmx:100799124 224.942
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g1942 7 38918302 38921759 Vra7g1942 7 38918302 38921759 ECH