Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g1938 ATGGCGTCCTCGTCGTCGCTGGCGAAGAGATGCCACTACGAAGTGCTCGATCTCCCCCAAGACTGTTCTCCCGAGGAGATTCGCTCCTCCTACCGCCGCCTTGCCCTTCAGCGCCACCCGGACAAGCTCATAAAATCGGGTATCTCCCAAGAGGAAGCCACCGCGCAGTTCCAGGAACTCCAACACGCATACGAAGTTCTCTCCGACCCCAAGGAACGCGCTTGGTACGATTCCCACCGTTCCCAAATCCTCTTCTCCGACCCTAATTCCCTCTCCAAATCGGTCGTCCCGGACCTCTTCTCCTTCTTCTCAAACACCGTCTATTCCGGCTACTCTGACACCGGAAAGGGCTTCTATAAAGTTTATTCTGATGTTTTCGATAAAATCCACGCCAACGAAATCAATTTCGCGCGGAAAATGGGGCTCGGAGTTGAGGCGGTTCGACAGGCTCCTCTAATGGGGAACTTGGATAGCCCCTACGCGCAGGTCACTGCGTTTTATGGATATTGGTTAGGGTTTTGTACTGTGATGGACTTTTCTTGGGTGGATGAGTATGATGTTATGGCAGGGCCGAACCGGAAGTCGCGGCGGCTTATGGAGGAGGAGAATAATAAGGCGAGGAAGAAGGCGAGAAGGGAGTATAATGATACTGTGAGGAGGTTGGGGGATTTTGTGAAGAAGAGGGATAAGAGGGTGATTGATATGAGGGTGAAGAAGAATATGGAGATGGAGAAGAAGAAGGAGGAAGAGAGGGAGAAAAAGAAGAGGTTGGAGAAGGAGAGGAAGGAGAGGGCCATGGCGTATGAGGAGGCTGACTGGGCTAAGGTTGATAATGAGGAGGAGGTAGAGGAATGGGTCGAGGAGGGGGAGGAGGAGAAGAAGAAGAATGATAAGGAGTTTTATTGTGTGTTATGTGGGAAGAAGTTTAAGAGTGAGAAGCAGTGGAAAAATCATGAGCAGTCCAAGAAGCATAAGGAGAGGGTTGCGGAGTTCAGGGATTCCATTGGTGATGAGCAGGATTTGGAAGAAGGAAAGGAGGGACTGGGAAATGAGGAAGATGGGGTTGGGGTGGATGGTGATGGTGGTTATGGGGTTGGTGATTTGGAAGCGAGGATTCGGGATGATCTTAATGTTGAAGACGGGGTAATTAGAAACGGGGTTGAACCGGATGATGATGATGATGGCGGTGGTGATGAGTTTTCCGATGCTTCGCATGTGAAGGAGGGGGAAGATTCCAATGGGTCGGTTAATCTTGATGTTAGTGGCAATCAAGATGGTGATAACGATGAAAATGGTGTTCTTGATGAGTTTTCCGATGCTTCGCATGCGAAGGAGGGGGAAGATTCCAATGGGTCGGTTAATCTTGATGATAGTGGCAATCAAGATGGTGATAACGATGAAAATGGTGTTCTTGAAGCAATGGTGGCTGGCCACAAGAACAGAAAGCCGCGAGCTTCAACCCACAAATCCAAGGCTTCAATATTTCCATCTCAAATTGAAACTGAGAAGGATGAATTTGGCCCTACGGAGTACAACAACCGGAAGCCCACGAGAAAGAAACGTAGAGCTAAGAAAGAGAAGGGTAGGGAAAATTGGGAAGAATCTCAGGGGACTGCTTCCAGTTGCAATGATGAGAACATAAACGGTAAAGGAAATGACAATTCTCATGGAGAGGAGTCTTGTTCCCAACATTTTACGGAAAATGGGGATAACATTATTGGGAATGAGCAGGTTAGTAGAGGTAATAAGATTTCAAACCAACCCGCTGATAAAAAGGGAGCTGGCAAGGACACAAAAATCACAGCCAAAATTTCATCCAAAGGAAGAAAAGCAAAGGTGACATCGAAAAACATTGGTAATACTTGTGATGCGTGTGGAGAGGAGTTTGAGTCAAGAAATAAATTACATAAACATCTTGGCGATTCTGGGCATGCGACAATAATAAGAGGTCGATAA 1956 0.4755 MASSSSLAKRCHYEVLDLPQDCSPEEIRSSYRRLALQRHPDKLIKSGISQEEATAQFQELQHAYEVLSDPKERAWYDSHRSQILFSDPNSLSKSVVPDLFSFFSNTVYSGYSDTGKGFYKVYSDVFDKIHANEINFARKMGLGVEAVRQAPLMGNLDSPYAQVTAFYGYWLGFCTVMDFSWVDEYDVMAGPNRKSRRLMEEENNKARKKARREYNDTVRRLGDFVKKRDKRVIDMRVKKNMEMEKKKEEEREKKKRLEKERKERAMAYEEADWAKVDNEEEVEEWVEEGEEEKKKNDKEFYCVLCGKKFKSEKQWKNHEQSKKHKERVAEFRDSIGDEQDLEEGKEGLGNEEDGVGVDGDGGYGVGDLEARIRDDLNVEDGVIRNGVEPDDDDDGGGDEFSDASHVKEGEDSNGSVNLDVSGNQDGDNDENGVLDEFSDASHAKEGEDSNGSVNLDDSGNQDGDNDENGVLEAMVAGHKNRKPRASTHKSKASIFPSQIETEKDEFGPTEYNNRKPTRKKRRAKKEKGRENWEESQGTASSCNDENINGKGNDNSHGEESCSQHFTENGDNIIGNEQVSRGNKISNQPADKKGAGKDTKITAKISSKGRKAKVTSKNIGNTCDACGEEFESRNKLHKHLGDSGHATIIRGR* 652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g1938 651 MobiDBLite consensus disorder prediction 242 261 - -
Vra7g1938 651 SUPERFAMILY beta-beta-alpha zinc fingers 289 338 IPR036236 -
Vra7g1938 651 Pfam Zinc-finger double-stranded RNA-binding 300 325 IPR022755 -
Vra7g1938 651 Pfam DnaJ domain 12 77 IPR001623 -
Vra7g1938 651 PANTHER DNAJ PROTEIN JJJ1 HOMOLOG 7 647 IPR044648 -
Vra7g1938 651 SMART ZnF_U1_5 297 331 IPR003604 GO:0003676|GO:0008270
Vra7g1938 651 ProSitePatterns Zinc finger C2H2 type domain signature. 622 644 IPR013087 -
Vra7g1938 651 ProSiteProfiles dnaJ domain profile. 11 80 IPR001623 -
Vra7g1938 651 PRINTS DnaJ domain signature 13 31 IPR001623 -
Vra7g1938 651 PRINTS DnaJ domain signature 31 46 IPR001623 -
Vra7g1938 651 PRINTS DnaJ domain signature 52 72 IPR001623 -
Vra7g1938 651 Coils Coil 196 216 - -
Vra7g1938 651 MobiDBLite consensus disorder prediction 590 604 - -
Vra7g1938 651 MobiDBLite consensus disorder prediction 534 586 - -
Vra7g1938 651 ProSiteProfiles Zinc finger C2H2 type domain profile. 300 329 IPR013087 -
Vra7g1938 651 Gene3D DnaJ domain 2 93 IPR036869 -
Vra7g1938 651 ProSitePatterns Zinc finger C2H2 type domain signature. 302 324 IPR013087 -
Vra7g1938 651 MobiDBLite consensus disorder prediction 312 352 - -
Vra7g1938 651 SMART dnaj_3 10 72 IPR001623 -
Vra7g1938 651 MobiDBLite consensus disorder prediction 312 613 - -
Vra7g1938 651 SMART c2h2final6 620 644 IPR013087 -
Vra7g1938 651 SMART c2h2final6 300 324 IPR013087 -
Vra7g1938 651 MobiDBLite consensus disorder prediction 367 390 - -
Vra7g1938 651 Gene3D Classic Zinc Finger 288 350 - -
Vra7g1938 651 ProSitePatterns Nt-dnaJ domain signature. 57 76 IPR018253 -
Vra7g1938 651 Coils Coil 238 267 - -
Vra7g1938 651 CDD DnaJ 11 69 IPR001623 -
Vra7g1938 651 MobiDBLite consensus disorder prediction 410 428 - -
Vra7g1938 651 MobiDBLite consensus disorder prediction 435 451 - -
Vra7g1938 651 SUPERFAMILY Chaperone J-domain 8 81 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g1938 Vra-Chr7 38887719 38890649 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g1938 1 647 C2H2 Transcription Factor Family AT1G74250 49.784 1.57e-180 525
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vra7g1938 DnaJ 1.1e-20 CL0392