Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g1929 ATGGAAGGAGATCAAATTCAAGAATTCAAACACGCGTGCAAGTTCTGCGGCAAGTGCTTCCCTTGTGGCAGATCCTTGGGGGGCCACATGAGGTCTCATATCACCAACTTGTCGTCGGAGGAAAAAGAGAAGCTTCCGACGAGGAAGCTTTTTTCCTCGTCTCTCAACAATGATGGAGACAAAGATTCCGAAGCTGCTGCAACCAACGCTGGCTATGGCCTCCGAGAGAACCCCAAGAAGACTTGGAGAATCTCGGATCATTCGAGCGAAGACGCTTTGGTGTTTGACAAGTTCTGCAAAGAGTGTGGCAAAGCGTTCCACTCTTGGAAGGCCTTGTTTGGTCACATGAAATGCCACTCCGAGAAAGAGAGAGCTTCTGACAGCTTGGAAGATCAAGATTCGTGGACTAATGCTAAGGTGATCATGGATAGTCAGTCTGATAACGAAGCAACTGCTCCAAATAAGAGAAGAAGGTCCAAGAGAAGAACGAGGTACACGGTTGCTTCTGCCGCAGCAACTTCTTCGGTTGTGTCTTTTGCCAATCCTTCCTCTTCTCTCTCTGAGGTTGAGCAGGAGCAAGAAGAGGTTGCTATGAGCTTGATGATGCTCAGTAGGGATGTGAGTCCTTGGAGTGGTCCTCATTCTGTTGCCGAGTCCTCTGACAACAACTCTGCTTATTTCGAAGCTCGATCTTCGGTTCGAACTAATCTGGTTGCCAAATTTGATGGCAGCACTGACTTCACGCCTAACACGGCAAGAATGATCAAGCAAAGTGATAATAAGTGGGAGGTTGGGAATTCGGAAAATCCCAACTCAATCAGAGGAAAGAGTTCGCAGCGTTTGACTACTACTGCTGCTACTGTGGAGACTATTGAAAATGGATTTGGAGCGAACAAAAGCGGAGTTTCTAGTAAAGGGTATGAAAAGGTCAACAACTCTGAGCTTCAGTATGGGTCTGCATTGGAGGATTCAGAAGGGGAACGTGGGAGGAGCAGAGTCAATGAACCAGAATCAATTTTATCAAAGTCCGCTGCTACCGGCAACAAGTACAATTCGATCAAGACAAAGCTTCTCGGCTCTGAATTGAAGTCAAACAAGAACTGGGTGGACAAGGCTTCAGAACCTGAATCAAGCAAGAACTCTCACAAGAGAGGCAAGTTTGAGTGTACCACTTGCAATAAAACCTTCCACTCATACCAAGCTCTTGGAGGCCATAGAGCTAGCCACAAGAAGATCAAGGGATGCTTTGCTTCGAGAAATGAGAGCAGCGAAAACAGCATTGAAACTGATCTCTCTCCTGATCCAATAACAACCGAACACAAGCTCGTGAACAACACTGACCGTGAGTATCTTGGGGAACAGCAACAGGGTGGTGCTGGTTTTCATGATGAGGTGGAAACAGTTACTGAGTCCAAGAAGAGCAAGGGGCACGAGTGCCCAATTTGCCTCAAAGTTTTTCCATCAGGCCAAGCCTTGGGTGGCCACAAGAGATCTCATATGACTGCTGGGTCTGAGAGTAGAAACTTTCAAACAGTTGTACTTCAGGAACCGGTAGCAGAAATCAGGGACTTCCTTGATCTTAATCTTCCTGCTGCTACTGAGGAAGAAAGCAATAGTCATGCTGACTCTAACAGACCCTGGTGGGTAGTACAAGACAACCACAAGCAGGAGGCACTGGTAGGCCTGATCTTATAG 1695 0.4708 MEGDQIQEFKHACKFCGKCFPCGRSLGGHMRSHITNLSSEEKEKLPTRKLFSSSLNNDGDKDSEAAATNAGYGLRENPKKTWRISDHSSEDALVFDKFCKECGKAFHSWKALFGHMKCHSEKERASDSLEDQDSWTNAKVIMDSQSDNEATAPNKRRRSKRRTRYTVASAAATSSVVSFANPSSSLSEVEQEQEEVAMSLMMLSRDVSPWSGPHSVAESSDNNSAYFEARSSVRTNLVAKFDGSTDFTPNTARMIKQSDNKWEVGNSENPNSIRGKSSQRLTTTAATVETIENGFGANKSGVSSKGYEKVNNSELQYGSALEDSEGERGRSRVNEPESILSKSAATGNKYNSIKTKLLGSELKSNKNWVDKASEPESSKNSHKRGKFECTTCNKTFHSYQALGGHRASHKKIKGCFASRNESSENSIETDLSPDPITTEHKLVNNTDREYLGEQQQGGAGFHDEVETVTESKKSKGHECPICLKVFPSGQALGGHKRSHMTAGSESRNFQTVVLQEPVAEIRDFLDLNLPAATEEESNSHADSNRPWWVVQDNHKQEALVGLIL* 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g1929 564 ProSiteProfiles Zinc finger C2H2 type domain profile. 387 414 IPR013087 -
Vra7g1929 564 ProSitePatterns Zinc finger C2H2 type domain signature. 99 119 IPR013087 -
Vra7g1929 564 ProSitePatterns Zinc finger C2H2 type domain signature. 479 499 IPR013087 -
Vra7g1929 564 ProSiteProfiles Zinc finger C2H2 type domain profile. 477 499 IPR013087 -
Vra7g1929 564 PANTHER C2H2-TYPE ZINC FINGER PROTEIN 1 563 - -
Vra7g1929 564 MobiDBLite consensus disorder prediction 53 72 - -
Vra7g1929 564 MobiDBLite consensus disorder prediction 262 281 - -
Vra7g1929 564 MobiDBLite consensus disorder prediction 316 343 - -
Vra7g1929 564 ProSitePatterns Zinc finger C2H2 type domain signature. 389 409 IPR013087 -
Vra7g1929 564 ProSiteProfiles Zinc finger C2H2 type domain profile. 11 33 IPR013087 -
Vra7g1929 564 SMART c2h2final6 477 499 IPR013087 -
Vra7g1929 564 SMART c2h2final6 11 33 IPR013087 -
Vra7g1929 564 SMART c2h2final6 387 409 IPR013087 -
Vra7g1929 564 SMART c2h2final6 97 119 IPR013087 -
Vra7g1929 564 MobiDBLite consensus disorder prediction 140 164 - -
Vra7g1929 564 ProSiteProfiles Zinc finger C2H2 type domain profile. 97 124 IPR013087 -
Vra7g1929 564 Pfam C2H2-type zinc finger 387 411 - -
Vra7g1929 564 Pfam C2H2-type zinc finger 11 33 - -
Vra7g1929 564 Pfam C2H2-type zinc finger 99 121 - -
Vra7g1929 564 Pfam C2H2-type zinc finger 477 501 - -
Vra7g1929 564 SUPERFAMILY beta-beta-alpha zinc fingers 98 409 IPR036236 -
Vra7g1929 564 SUPERFAMILY beta-beta-alpha zinc fingers 8 35 IPR036236 -
Vra7g1929 564 MobiDBLite consensus disorder prediction 321 335 - -
Vra7g1929 564 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 563 - -
Vra7g1929 564 Gene3D Classic Zinc Finger 384 499 - -
Vra7g1929 564 ProSitePatterns Zinc finger C2H2 type domain signature. 13 33 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g1929 Vra-Chr7 38794660 38797916 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g1929 4 535 C2H2 Transcription Factor Family AT1G26610 33.574 2.68e-59 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vra7g1929 zf-C2H2_6 2.1e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g1929 - - gmx:102669916 868.611