Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g1914 ATGGGGTGTGTGGTGGCGAAGCAGGCTGTTTCTGTCACACCCGCGATTGAGCACTCGGTTGAGTCGGATAAGAACAGGAAGAAGAAGACTGAGTCTGGTAGGAGCGAGTTGGGCGAGTCAGGGAGAGCGAGTTCCAATGGTGGAAGTGAGTCTCTGAGCTTCAGGTTGGGTAACCTGAGCAAGTACGTGGAGGGAGAGCAGGCGGCGGCAGGTTGGCCAGCGTGGCTCAGCGCCGTCGCAAGTGAGGCCATTCACGGTTGGGTTCCTCTTCGAGCTGACGCATATGAGAAACTTGAAAAGATTGGCCAGGGAACATATAGTAGTGTTTTCCGAGCAAAGGAGATTGAGACCGGAAAGATAGTAGCTTTGAAGAAGGTGAGATTTGACAATTTTGAGCCGGAGAGTGTGAGGTTTATGGCACGAGAAATAATGATTCTTAGGAGGCTTGATCATCCAAACATCATTAAACTGGAGGGCTTGATTACTTCTAGATTGTCTTGTAGCATATACCTTGTGTTTGAGTACATGGAGCACGACATCACGGGGCTCTTGTCTAGACCAGAAATCAAGTTTAGTGAATCACAGATCAAATGCTACATGAAACAATTGTTATCTGGTCTTGAGCACTGTCACTCACGGGGTGTGATGCACCGGGACATCAAAGGATCAAATCTTTTAGTGAATAATGAAGGGATATTGAAGGTGGCAGATTTTGGACTCGCAAATTTCTCCAATTCTGGAAACAAGCAGCCCCTCACTAGTCGTGTAGTCACGTTATGGTACCGTCCTCCAGAACTTTTGCTCGGTTCAACAGATTATGGTCCATCCGTGGATATTTGGAGTGTTGGCTGTGTATTTGCAGAATTACTAATTGGGAAGCCTATACTTCAGGGGAGAACCGAGGTTGAACAACTGCACAAAATTTTCAAGCTTTGTGGCTCCCCGCCTGAAGAATACTGGAAAAAGACCAGACTTCCTCACGCAACATTGTTCAAGCCACAACAACCATACGATAGTTGCCTCCGACAGACATTTAAAGATTTTCACGTATCCAGTGTAAATCTTCTACAGACTCTTCTTTCTGTTGAACCAAGCAAACGTGGGACTGCCTCCTCTGCTCTCTCATTAGAGTATTTCAAAGCAAAACCTTATGCATGCGACCCATCAAGCTTACCAATATACCCACCTAGCAAGGAGATTGATGCGAAACATGAAGAGGAGTCAAGAAGGAAAAAAATTGGTGGGCGAGCTGGTGTACCAGAATCAAGAAAACCATCAAGAAAGCCACTAGCACTGAGTAAATTAGCCCCAGCAGAGGATTTGGCAACTCAAACTCAGACTTCCCAAAAGATTGATGATAGATGTATCCACACACTTAAAGAGGAGAACACTAATGCAGGTGAGGGGGCACCAAAGCAGTCTGGTGGTAAACCAGACGATGATTCCCATGTGAAGAAGGCATCTCAAGTAGATATTCCCTTTCCTGGGCCATTGCAAGTTTCAAAATCAAGTGGCTTTGCATGGGCTAAAAGGCGTAGAGATGACACTTCAATTAGAACTCACAGTCGTTCTATTTCTAGAGGGTACATCTTTAATTCATTGGAAACTTCTACAATAAATTCAAGGAATAATTCTGAATCCAGAAACTACGAAAATAATGATTTTTTCGGGACATGCACCAACTCAAGGGGCCATGACCTACTTGAAATTTCTAAGCTTGCCATGAAAAATCAATGGAGTAAGTTTGATCGTCCAGATTCATTTGATACTGAGGAGTACCATTCACAAGAACTTTCCATGGCGCTTTATAACAGGCAAGACTCATTATCCAAGAGAAGTAACCTGAGTTACCAGGATCAAGGAGAAAAGGTGGAGTTTTCAGGGCCTCTGCTATCTCAAATGCACACAGTTGATGAGCTCTTGGAAAGACATGAGCGTCACATCCGGCGTACTGTCAGAAGATCATGGTTTCAGAGAGGTAAGAAGCAAGGGAAGTAA 1998 0.4469 MGCVVAKQAVSVTPAIEHSVESDKNRKKKTESGRSELGESGRASSNGGSESLSFRLGNLSKYVEGEQAAAGWPAWLSAVASEAIHGWVPLRADAYEKLEKIGQGTYSSVFRAKEIETGKIVALKKVRFDNFEPESVRFMAREIMILRRLDHPNIIKLEGLITSRLSCSIYLVFEYMEHDITGLLSRPEIKFSESQIKCYMKQLLSGLEHCHSRGVMHRDIKGSNLLVNNEGILKVADFGLANFSNSGNKQPLTSRVVTLWYRPPELLLGSTDYGPSVDIWSVGCVFAELLIGKPILQGRTEVEQLHKIFKLCGSPPEEYWKKTRLPHATLFKPQQPYDSCLRQTFKDFHVSSVNLLQTLLSVEPSKRGTASSALSLEYFKAKPYACDPSSLPIYPPSKEIDAKHEEESRRKKIGGRAGVPESRKPSRKPLALSKLAPAEDLATQTQTSQKIDDRCIHTLKEENTNAGEGAPKQSGGKPDDDSHVKKASQVDIPFPGPLQVSKSSGFAWAKRRRDDTSIRTHSRSISRGYIFNSLETSTINSRNNSESRNYENNDFFGTCTNSRGHDLLEISKLAMKNQWSKFDRPDSFDTEEYHSQELSMALYNRQDSLSKRSNLSYQDQGEKVEFSGPLLSQMHTVDELLERHERHIRRTVRRSWFQRGKKQGK* 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g1914 665 MobiDBLite consensus disorder prediction 16 50 - -
Vra7g1914 665 ProSitePatterns Protein kinases ATP-binding region signature. 101 124 IPR017441 GO:0005524
Vra7g1914 665 PANTHER CELL DIVISION PROTEIN KINASE 28 658 - -
Vra7g1914 665 MobiDBLite consensus disorder prediction 19 36 - -
Vra7g1914 665 ProSitePatterns Serine/Threonine protein kinases active-site signature. 215 227 IPR008271 GO:0004672|GO:0006468
Vra7g1914 665 MobiDBLite consensus disorder prediction 392 496 - -
Vra7g1914 665 Gene3D Phosphorylase Kinase; domain 1 82 177 - -
Vra7g1914 665 ProSiteProfiles Protein kinase domain profile. 95 379 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra7g1914 665 CDD STKc_CDK9_like 95 379 - -
Vra7g1914 665 SUPERFAMILY Protein kinase-like (PK-like) 88 385 IPR011009 -
Vra7g1914 665 Gene3D Transferase(Phosphotransferase) domain 1 178 418 - -
Vra7g1914 665 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 28 658 - -
Vra7g1914 665 SMART serkin_6 95 379 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra7g1914 665 Pfam Protein kinase domain 95 379 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra7g1914 665 MobiDBLite consensus disorder prediction 398 423 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g1914 Vra-Chr7 38650862 38656996 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g1914 87 439 Core Cell Cycle Gene Families AT5G10270 48.780 2.60e-114 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Vra7g1914 Pkinase 1.4e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g1914 - - gmx:100784406 1186.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g1041 3 10391048 10398407 Vra7g1914 7 38650862 38656996 ECH
Vra7g1914 7 38650862 38656996 Vra7g1914 7 38650862 38656996 ECH