Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g1908 ATGGATGCTGATACCGAGACTGAGGAACTTATTAATTTGAACAATAAAGCAAGTAACTGTGGTGGGAATAATAGTAAGAGTGGCGATGGCTTTATTGACAGAAGCAAAGTGAGGATTTTGTTGTGTGACAACGATTCCAAGAGTTCTGAAGAGGTTTTTACTCTTCTTTTGAGGTGTTCTTATCAGGTTACTTCAGTAAAATCGGCTAGGCAAGTAATTGATGCACTGAATGCGGAGGGGCAATATATAGACATGATACTAGTTGAAGTTGACCTTCCGGTGAAGAAAGGCATGAAGTTGTTGAAGTACATAGCAAGGGATAAAGAATTATGCCGAATCCCTGTTATAATGATGTCTGCACAAGATGAGGTATCCATTGTTGTAAAGTGCTTGAGGCTTGGGGCAGCAGATTACCTAGTAAAGCCTTTACGCACAAATGAACTATTAAATTTGTGGACACACATGTGGAGAAGGAGACGCATGCTTGGACTTGTGGAGAACAACATCTTGAATTATGAGTTTGAACTAGTAGCATCAGATCCAAGTGATGCCAATACAAACAGTACCACCTTGTTCTCTGATGATACAGATGACAAGTCCAAAAGAAGCACTAATCCAGAGACCGTAGTATCAATCCAACAAGAAGAAGAGGTTAGTATTGCCGCCACCACCCATGTTGTGTTGGAGCTTCCCAGTGCTCTTGTCTCAGAATATCAGCCTGATGTTCCTGGAATAAGTGATCGCAGAACAGGTACTCCAATACAGCATCCATCATGCAGCAGAACTAATATTGGACATTTTTCATCTGGTCCAAAGAAGAGTGAACTGAAGATTGGAGAGTCATCAGCCTTTTTCACCTATGTCAAAGCAACAGCACTGAAGAGCAACATTGAAGAGACTGCTCATGTTGACAATACTACTACAGAAGTTAGGGTGGAACATGTGAATCAAGCATGTGGTGAACAGGATGGTAATGACCTTAATGCACATGAAAATGGAGAAATGTTTGAAAATCATTCACAAGATGACTTACCCAGCAGCAACAGTATCCATGATTCTTTTTCTATTGAGAGATCTTGTACTCCACCTGCATCTATGGAAGTTTCTCAGCAAAAGCATTACAGGGAAGAACATTCTCAGGGAGTAGTGCATCCAATAAATGGAAATCATGGTTCCGATCCTGCTCAACATGCTTATCCATATTATATTTCAGGAGTTGTTAATCATGTTATGATGCCATCATCGGCACAAATGTATCAAAAGAATATCCAGGACTTGCAAAGTCATTCTGGTTCTTCCGTGATTGCACAGTACAATCATCTTCCCCAATGTCCTCCTCAAGCAAGTGGGATGACATCCTTCCCATATTATCCAATGAGCATTTGCTTACAACCTGGTCAGATTTCTACAACTCATTCTTGGCCATCGTTAGGAAGTTCAAGTTCATGTGAAGTGAAATCGAACAAGGTTGATAGGAGAGAAGCAGCGCTAATGAAGTTTAGACAGAAAAGGAAAGAACGCTGTTTTGATAAGAAAATTAGGTATGTCAACAGAAAACGGCTTGCAGAAAGGCGGCCTCGTGTGAGGGGACAGTTTGTGAGAAAGTTGAATGGTGTTGATGTGGATCTTAATGGACAACCTACTTCCACTGATTACGATGAAGAGGAGGAAGACAACCATGTAGCAAGAGATTTGTCTCCTGAGGATGCTTGA 1713 0.4104 MDADTETEELINLNNKASNCGGNNSKSGDGFIDRSKVRILLCDNDSKSSEEVFTLLLRCSYQVTSVKSARQVIDALNAEGQYIDMILVEVDLPVKKGMKLLKYIARDKELCRIPVIMMSAQDEVSIVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRMLGLVENNILNYEFELVASDPSDANTNSTTLFSDDTDDKSKRSTNPETVVSIQQEEEVSIAATTHVVLELPSALVSEYQPDVPGISDRRTGTPIQHPSCSRTNIGHFSSGPKKSELKIGESSAFFTYVKATALKSNIEETAHVDNTTTEVRVEHVNQACGEQDGNDLNAHENGEMFENHSQDDLPSSNSIHDSFSIERSCTPPASMEVSQQKHYREEHSQGVVHPINGNHGSDPAQHAYPYYISGVVNHVMMPSSAQMYQKNIQDLQSHSGSSVIAQYNHLPQCPPQASGMTSFPYYPMSICLQPGQISTTHSWPSLGSSSSCEVKSNKVDRREAALMKFRQKRKERCFDKKIRYVNRKRLAERRPRVRGQFVRKLNGVDVDLNGQPTSTDYDEEEEDNHVARDLSPEDA* 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g1908 570 ProSiteProfiles Response regulatory domain profile. 38 156 IPR001789 GO:0000160
Vra7g1908 570 ProSiteProfiles CCT domain profile. 493 535 IPR010402 GO:0005515
Vra7g1908 570 SMART REC_2 37 152 IPR001789 GO:0000160
Vra7g1908 570 MobiDBLite consensus disorder prediction 540 570 - -
Vra7g1908 570 PANTHER TWO-COMPONENT RESPONSE REGULATOR 2 556 IPR045279 GO:0009736
Vra7g1908 570 MobiDBLite consensus disorder prediction 339 368 - -
Vra7g1908 570 Pfam Response regulator receiver domain 39 150 IPR001789 GO:0000160
Vra7g1908 570 Pfam CCT motif 493 535 IPR010402 GO:0005515
Vra7g1908 570 Gene3D - 37 233 - -
Vra7g1908 570 SUPERFAMILY CheY-like 35 163 IPR011006 -
Vra7g1908 570 MobiDBLite consensus disorder prediction 185 207 - -
Vra7g1908 570 MobiDBLite consensus disorder prediction 320 368 - -
Vra7g1908 570 PANTHER RESPONSE REGULATOR AND TRANSCRIPTION FACTOR RR-A-TYPE FAMILY-RELATED 2 556 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g1908 Vra-Chr7 38576824 38582446 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g1908 26 569 Response Regulator Gene Family AT5G61380 49.842 1.87e-179 518
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Vra7g1908 Response_reg 1.6e-17 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g1908 K12127 - gmx:100786522 1004.2