Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g1901 ATGTTACGAGCTTGGATGGGAAGGGTTAAATTGAAGATAAAGAAATTAGAGAGCATAAGCAACCGGCATGTGACTTATTCAAAGCGTAAAAGTGGAATTTTAAAGAAAGCAAAGGAATTATCAATACTGTGCGACATAGACATTCTCCTTCTCATGTTTTCTCCTACAGGAAAGCCTACATTACTACAAGGAGAGCGCAGTAATATTGAGGAAGTTGTTGCAAAATTTGCTCAACTTAGCCCACAAGAAAGGGCCAAAAGGAAAATGGAAAGTCTTGAAGCTTTAAAGAAAACCTTCAAGAAATTGGATCATGACGTAAAAATACAGGATTTCTTAGGTTCAAGCAGCCAAACAGTGGAGGAATTATCTCATCAAGTGAGGGTTTTACAAGCTCAGCTCACAGAAGTACATCAGAGACTGAGCTATTGGAATAATGTAGAGAAGATCAACAATTTAGAGCATCTGAGGCAAATGGAAGAGTCAATACGAGAATCAATCAATCGAGTCGGCCTGCAGAAGGAAAATTTAGGGAAGCATCAACTCATTTCACTTGAATGTGCTAACCAGTTACAGGAAGGGATGACTTTACCCTTGATGATGGCAAGTCTACAAGAATCTCAACCACTGTCTTGGCTTTTGAATAATGATAATCATCAATTGTTGTTACCAAATGAACCAAAATTTCTACCATTCAGTGATAATACCAATAGAGAAGCTGAGTGTTCCACTGACATTTCACTTCCAAGCTATTCAAATTATATTGGGAGCAACAAACTTGAAGTTGAGCTCTCCCCAAGTGACTTTGGGTCAAGGAGGTGGTGCAATGAACGAGCTAAATGGAACTACATACTTAAATGTACAACGTTGTGA 870 0.3851 MLRAWMGRVKLKIKKLESISNRHVTYSKRKSGILKKAKELSILCDIDILLLMFSPTGKPTLLQGERSNIEEVVAKFAQLSPQERAKRKMESLEALKKTFKKLDHDVKIQDFLGSSSQTVEELSHQVRVLQAQLTEVHQRLSYWNNVEKINNLEHLRQMEESIRESINRVGLQKENLGKHQLISLECANQLQEGMTLPLMMASLQESQPLSWLLNNDNHQLLLPNEPKFLPFSDNTNREAECSTDISLPSYSNYIGSNKLEVELSPSDFGSRRWCNERAKWNYILKCTTL* 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g1901 289 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 16 60 IPR002100 GO:0003677|GO:0046983
Vra7g1901 289 SUPERFAMILY SRF-like 7 100 IPR036879 GO:0003677|GO:0046983
Vra7g1901 289 CDD MADS_SRF_like 7 89 IPR033897 GO:0000981|GO:0000987|GO:0045944
Vra7g1901 289 ProSiteProfiles MADS-box domain profile. 6 58 IPR002100 GO:0003677|GO:0046983
Vra7g1901 289 PRINTS MADS domain signature 8 28 IPR002100 GO:0003677|GO:0046983
Vra7g1901 289 PRINTS MADS domain signature 28 43 IPR002100 GO:0003677|GO:0046983
Vra7g1901 289 PRINTS MADS domain signature 43 64 IPR002100 GO:0003677|GO:0046983
Vra7g1901 289 Coils Coil 82 102 - -
Vra7g1901 289 Gene3D - 19 102 IPR036879 GO:0003677|GO:0046983
Vra7g1901 289 PANTHER SERUM RESPONSE FACTOR HOMOLOG 6 260 - -
Vra7g1901 289 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL65 6 260 - -
Vra7g1901 289 Coils Coil 119 139 - -
Vra7g1901 289 SMART madsneu2 6 65 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g1901 Vra-Chr7 38496834 38501261 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g1901 6 258 Type I MADS-box Gene Family AT2G03060 53.053 3.49e-87 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vra7g1901 SRF-TF 1.7e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g1901 - - gmx:100811765 483.026
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g1901 7 38496834 38501261 Vra7g1901 7 38496834 38501261 ECH