Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g1892 ATGGACTCTCACCCTCTTATGAGTTGGAGCTCTTATTATCAGATAGAAGAAAAACCATTGCCATTTACGTGCCAGTTTTCTTACAGCGAGAACAGTGAAGTGTATCCTCCTCCACTACACGATTTACCAATCCAAGACTGCTACCAGGGTGCTGTTCCTCTTACGGAGTATTACCCTTCTGATCCTTTATACGAAACACTCGCCATCGAGCTAACACCGACCCTGCGAGCAGACTGTGATTTTTATGATATATCTAAGGAGCTTTCTGTGTGGAACGAAGTGAATGCTGTGTTTGATTCAGAAGTTGATTTATTATTTCGTAACAAGGAGGAAAGTTTGAAGGAGATGGTGGATGATAGCAAGGTTAACGAAGGGAGAGAAGAAATAACGAACCCTAGAAATAGCAGAAAGTTATCAAGGGAGACGATATCTGAGTACTTTTACATGCCAATAACACAAGCTGCCAGAGAACTTAATGTGGGGCTGACACTTCTGAAGAAAAGGTGCAGAGAGTTGGGTATAAGAAGGTGGCCCCACAGAAAGCTGATGAGCTTGCAAACTCTGATAAATAATGTGCAGGAGCTACTGAAAGAGGAGGGGCCGGAGAGTGAAGAGAAGTTAAGATTTGCCATTGAGACATTGGAAAAGGAAAAGAAGCTTTTGGAGGAAATGCCAGATATTGAACTGGAAGATAATACAAAAAGACTTAGACAGGCATGTTTCAAGGCCAACTATAAGAAAAGGAAGCTAGGACAGAGGGAACCAGACTGTTCTTCTTGGAGTGGCGTAATGTCAGAATATAATAACGAAAGTGAAGAAGAACTGGATATGAAGTATCTCATTTCTCAGTTAGTTTAA 858 0.4149 MDSHPLMSWSSYYQIEEKPLPFTCQFSYSENSEVYPPPLHDLPIQDCYQGAVPLTEYYPSDPLYETLAIELTPTLRADCDFYDISKELSVWNEVNAVFDSEVDLLFRNKEESLKEMVDDSKVNEGREEITNPRNSRKLSRETISEYFYMPITQAARELNVGLTLLKKRCRELGIRRWPHRKLMSLQTLINNVQELLKEEGPESEEKLRFAIETLEKEKKLLEEMPDIELEDNTKRLRQACFKANYKKRKLGQREPDCSSWSGVMSEYNNESEEELDMKYLISQLV* 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g1892 285 Coils Coil 204 224 - -
Vra7g1892 285 PANTHER PROTEIN RKD1-RELATED 53 256 - -
Vra7g1892 285 Pfam RWP-RK domain 138 185 IPR003035 -
Vra7g1892 285 ProSiteProfiles RWP-RK domain profile. 120 205 IPR003035 -
Vra7g1892 285 PANTHER PROTEIN RKD4 53 256 IPR044607 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g1892 Vra-Chr7 38450523 38451673 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g1892 135 255 AtRKD Transcription Factor Family AT1G18790 73.770 4.53e-57 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Vra7g1892 RWP-RK 8.1e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g1892 - - vun:114175527 489.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g1892 7 38450523 38451673 Vra7g1892 7 38450523 38451673 ECH
Vra7g1892 7 38450523 38451673 Vra3g1065 3 10861179 10862306 PCT