Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g1889 ATGAACATGGGGAGGCCACCTTGCTGTGACAAAATTGGAATTAAGAAAGGACCTTGGACTCCAGAAGAAGATATCATGTTGGTGTCTTACATTCAAGAACATGGAGCAGGAAATTGGAGATCAGTTCCCACTAACACAGGTTTGATGAGATGCAGCAAGAGCTGCAGGCTTAGATGGACTAATTATCTTCGACCTGGTATCAAACGAGGTAATTTCACCGAGCATGAGGAGAAGATCATAATCCACCTTCAAGCCCTTTTGGGCAACAGATGGGCTGCTATAGCTTCGTATCTTCCAGAAAGGACAGACAATGACATAAAAAATTATTGGAATACCCATTTGAAGAAGAAGATGAAAGCAAGTGATGAAAACGAAGAGGGCATGGAACAAGAAGGACATTCTTCTTCTTCTTCTTTACATCCAAAGGGTCAGTGGGAGAGAAGACTACAAACAGATATAAAAACAGCCAAACAAGCCCTGTGTGATGCTTTGTCCCTTCACACGACACCAGCAACACATGCTGTGCCTGAGACCAAGCCTTCTTCAACATCTCATCAACCCTACAGCCACGCCTCATCTTCATATGCATCTAGCTATGAAAACATTTCCCGGTTGATGGAAAACTGGATGAAAACTCCAAACTCATCATCACACGAGACAAATTCACTAGGGGATTATTCCTTCAATAACATGCTCAATATTAATACACCAAGATCCAGTTCTAGCGAGGGAGCACATAGCACCACTAATACCACGTGTGCACAAGATCATGTTTTTGACTTGTTCACCTTCAACTCTTCCACAAACTATGGTCCTGCCTCTCAGACTCAAGTGCCTCTTACCATTATAGAGAATTGGCTTTTCGAGGATGGGGCTTCTCAGTCTCATGAAGATCTCATCAGCATGTCGCTGGAAGAAAGTACTTCAGGTTTGTTTTAG 939 0.4292 MNMGRPPCCDKIGIKKGPWTPEEDIMLVSYIQEHGAGNWRSVPTNTGLMRCSKSCRLRWTNYLRPGIKRGNFTEHEEKIIIHLQALLGNRWAAIASYLPERTDNDIKNYWNTHLKKKMKASDENEEGMEQEGHSSSSSLHPKGQWERRLQTDIKTAKQALCDALSLHTTPATHAVPETKPSSTSHQPYSHASSSYASSYENISRLMENWMKTPNSSSHETNSLGDYSFNNMLNINTPRSSSSEGAHSTTNTTCAQDHVFDLFTFNSSTNYGPASQTQVPLTIIENWLFEDGASQSHEDLISMSLEESTSGLF* 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g1889 312 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Vra7g1889 312 MobiDBLite consensus disorder prediction 173 192 - -
Vra7g1889 312 SUPERFAMILY Homeodomain-like 13 110 IPR009057 -
Vra7g1889 312 PANTHER TRANSCRIPTION FACTOR MYB-HB-LIKE FAMILY-RELATED 3 298 - -
Vra7g1889 312 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 68 118 IPR017930 -
Vra7g1889 312 SMART sant 68 116 IPR001005 -
Vra7g1889 312 SMART sant 15 65 IPR001005 -
Vra7g1889 312 Pfam Myb-like DNA-binding domain 69 114 IPR001005 -
Vra7g1889 312 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
Vra7g1889 312 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 3 298 - -
Vra7g1889 312 Gene3D - 15 68 - -
Vra7g1889 312 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 67 IPR017930 -
Vra7g1889 312 CDD SANT 71 114 IPR001005 -
Vra7g1889 312 CDD SANT 18 63 IPR001005 -
Vra7g1889 312 Gene3D - 71 144 - -
Vra7g1889 312 MobiDBLite consensus disorder prediction 120 145 - -
Vra7g1889 312 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g1889 Vra-Chr7 38411213 38412956 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g1889 3 312 MYB Transcription Factor Family AT5G62470 48.670 1.64e-100 297
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vra7g1889 Myb_DNA-binding 1.7e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g1889 K09422 - gmx:100799402 462.225
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g1889 7 38411213 38412956 Vra7g1889 7 38411213 38412956 ECH