LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vra7g1871	ATGCGAACTTCATGGGCTGATTTGGCTGCAAATTCTGCAGCTGAAAATTCGGGTCCCGCTTTTTCTGCTAACAATGCGGGAACTGGTAGTACTGTAGCTCCTTCACGACCAGTTTATGTTCCTCCTCATCTTAGGAACCGCCAGCCATCAGCGGAAGCCCCAGTCCCAGCCCCAGCCCCAGCATACAGTGGTCCTTCTTCTGGTTCTGTTGGCTCTAGTGCTGCTGGTAATTCTGGATCCCGTTGGCCTGCACCCAGAAACGATCATCGTTCTGGGTATGGTGGTGGTGGTGGACGCCCAGGTGGATGGGGAAATAGAAGTGGTGGGTGGGATCGTGGCAGGGAAGTCAACCCCTTTGAAGAAGAGGATAATGCTGAAGAGGCATTTAATGAGCAGGAGAATACAGGAATAAATTTTGATGCATATGAGGACATTCCGGTAGAGACCAGTGGTGAAAATGTGCCCCCACCTGTGAATACATTTGCAGAGATTGACTTGGGTGATGCACTTAATCAGAATATAAGAAGGTGCAAATATGTGAAGCCAACACCTGTTCAGCGGCATGCCATACCAATATCCCTAGGTGGACGGGATTTGATGGCTTGTGCACAGACTGGTTCTGGAAAGACAGCTGCATTCTGTTTCCCGATCATCAGTGGAATTATGAGGGGCCAACCTGTCCAGAGGCCACCTCGTGGGGTGCGTACTGTGTATCCACTTGCGCTTGTTCTCTCTCCAACGAGGGAGCTATCAATGCAAATACATGAAGAGGCTAGGAAGTTTTCATTCCAAACTGGTGTTAAGGTGGTTGTTGCTTATGGTGGAGCACCAATAAATCAGCAGCTGCGGGATCTTGAGAGAGGGGTGGACATTCTTGTTGCAACTCCTGGAAGACTGGTAGATTTGCTGGAGAGAGCTAGAGTTTCACTGCAGATGATTCGATATCTGGCCTTAGATGAGGCAGATCGGATGCTAGATATGGGTTTTGAGCCACAAATAAGGAAGATTGTAGAACAAATGGACATGCCTCCACCAGGTGTTAGACAGACTATGTTGTTCAGTGCAACATTTCCGAAAGAGATACAGAGACTGGCTTCTGATTTTCTTTCAAATTATATTTTCCTGGCTGTTGGAAGAGTGGGTTCAAGTACTGATTTAATTGTCCAAAGAGTTGAGTACGTTCAAGAGTCTGACAAGAGAAGTCACCTAATGGACCTTCTTCATGCACAGAGGGCAAATGGTGTACAGGGAAAGCAAGCTTTGACTTTAGTTTTTGTGGAGACAAAGAAGGGAGCTGATTCACTGGAACACTGGTTGTGTCTTAATGGTTTTCCTGCAACTACTATTCATGGTGATAGGTCGCAGCAGGAAAGAGAATTAGCATTGAGGTCTTTTAAAAGTGGCAACACCCCCATATTGGTTGCTACCGATGTTGCTGCACGTGGTCTTGATATCCCCCATGTTGCTCATGTAGTCAACTTTGACCTGCCAAATGATATTGATGATTATGTACACCGGATTGGAAGAACAGGGCGAGCTGGAAAGAAAGGCCTTGCAACTGCATTCTTTAATGATAACAATTCATCACTAGCTAGAGCTTTAGCAGATCTGATGCAAGAAGCAAATCAAGAAGTACCTGCTTGGCTCTCTCGGTATGCTGCTCGGTCTTATGGTGGAGGGAGAAACCGCCGATCAGGTGGTCGGTTTGGTAGTCGAGACTTTCGGAGAGAGGGCTCGTTTAACAGGGGTTCTTCAGATTACTACAGTGCAGGAAACAGCAGTGGTGGATATGGAGGTTCTGGTGGATATGCTGGAGGGTATGGTCCAGGCGTCACTAGTGCCTGGGACTGA	1851	0.4738	MRTSWADLAANSAAENSGPAFSANNAGTGSTVAPSRPVYVPPHLRNRQPSAEAPVPAPAPAYSGPSSGSVGSSAAGNSGSRWPAPRNDHRSGYGGGGGRPGGWGNRSGGWDRGREVNPFEEEDNAEEAFNEQENTGINFDAYEDIPVETSGENVPPPVNTFAEIDLGDALNQNIRRCKYVKPTPVQRHAIPISLGGRDLMACAQTGSGKTAAFCFPIISGIMRGQPVQRPPRGVRTVYPLALVLSPTRELSMQIHEEARKFSFQTGVKVVVAYGGAPINQQLRDLERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPPGVRQTMLFSATFPKEIQRLASDFLSNYIFLAVGRVGSSTDLIVQRVEYVQESDKRSHLMDLLHAQRANGVQGKQALTLVFVETKKGADSLEHWLCLNGFPATTIHGDRSQQERELALRSFKSGNTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKKGLATAFFNDNNSSLARALADLMQEANQEVPAWLSRYAARSYGGGRNRRSGGRFGSRDFRREGSFNRGSSDYYSAGNSSGGYGGSGGYAGGYGPGVTSAWD*	617

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vra7g1871	616	Gene3D	-	378	557	IPR027417	-
	Vra7g1871	616	SMART	ultradead3	178	390	IPR014001	-
	Vra7g1871	616	PANTHER	DEAD-BOX ATP-DEPENDENT RNA HELICASE 52B-RELATED	52	584	-	-
	Vra7g1871	616	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	240	531	IPR027417	-
	Vra7g1871	616	SMART	helicmild6	433	514	IPR001650	-
	Vra7g1871	616	MobiDBLite	consensus disorder prediction	65	80	-	-
	Vra7g1871	616	CDD	SF2_C_DEAD	387	523	-	-
	Vra7g1871	616	Pfam	Helicase conserved C-terminal domain	399	514	IPR001650	-
	Vra7g1871	616	ProSiteProfiles	DEAD-box RNA helicase Q motif profile.	159	187	IPR014014	GO:0003724
	Vra7g1871	616	Gene3D	-	114	377	IPR027417	-
	Vra7g1871	616	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	386	553	IPR001650	-
	Vra7g1871	616	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	190	375	IPR014001	-
	Vra7g1871	616	MobiDBLite	consensus disorder prediction	1	32	-	-
	Vra7g1871	616	MobiDBLite	consensus disorder prediction	1	123	-	-
	Vra7g1871	616	Pfam	DEAD/DEAH box helicase	183	364	IPR011545	GO:0003676\|GO:0005524
	Vra7g1871	616	CDD	DEADc_DDX3_DDX4	160	381	IPR044763	GO:0003724\|GO:0005524
	Vra7g1871	616	PANTHER	ATP-DEPENDENT RNA HELICASE DBP3	52	584	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vra7g1871	Vra-Chr7	38218480	38227642	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vra7g1871	157	546	Eukaryotic Initiation Factors Gene Family	AT3G19760	31.969	3.37e-62	209

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vra7g1871	K11594		-	gmx:100795756	1004.2