Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g1855 ATGACCCAACTACTCCCCATCGTCGTTTACGTTCTGTTATCTGTAGTAGCTTTCGTATCCTGTCTCAACCAAGAGGGGCTTTACCTTTACCAACTCAAGCGCTCTCTCGACGACCCTTATTCCACTCTCTCCTCCTGGAACCCAAGGGACGCCACCCCTTGCAACTGGTATGGTGTAACCTGTGCCGGCGATGCCTTCAACACCACTGTTACAGAATTGGACCTTTCCGACACCAACATCGGAGGCCCATTCCCTGCCAACATCCTCTGTCGTCTCCCCAACCTCCTTTCCATAAACTTCTTCAACAACTCCATCAACCAAACCCTCCCTCTCGACATCTCCCTCTGCCGCTCTCTCCGCCACCTCGACCTCTCCCAGAACCTCCTCACCGGTCCCCTCCCCGCCACGCTCCCGCTTCTCCCCAACCTCCGCTACCTCGACCTCACCGGCAACAACTTCTCCGGCCCAATCCCGGACTCCTTCGGAACCTTCCAGAACCTCCAGGTGCTCTCCCTCGTCTCCAATCTTCTAGAAGGTACCATCCCCCCCTCGTTGGGCAACGTCTCCTCTTTGAAAATGCTCAACCTCTCTTACAACCCCTTCTTCCCTGGTCGGATCCCTCCGGAGCTCGGCAACCTCACCAACCTCGAGGTCCTCTGGCTCACTCAATGCAACCTTGTCGGCGTTATTCCGGCCTCCCTCGGGAACCTCAACAAGCTCCAGGACCTCGACCTTGCGCTCAATGACCTCTACGGCTCCATCCCCAGTTCGCTCACTCAGTTAACCAGCCTCACGCAGATCGAGTTGTACAACAACTCGCTCTCCGGGGAGTTGCCTCGGGGAATGGGGAATCTCACCCGCTTGAGGCTCCTCGACGCCTCCATGAACCACTTAACGGGGAAGATTCCCGACGAGCTTTGTTCCTTGCCGTTGGAGAGTCTTAATTTGTACGAAAACCGTTTCGAGGGAGAGTTACCGGCCAGCATTGCGGATTCCGAGAATCTTTACGAGCTTCGACTCTTCGGTAACCGCCTCACCGGCAGGTTACCGGAGAATCTCGGTAAGAATTCGCCGCTTCGCTGGCTGGACGTTTCGAGCAACCAGTTCTGGGGGCCTATTCCGGCGACGCTCTGTGATAATGGTGTTCTTGAGGAGCTTCTGGTGATTTATAATCTTTTCTCTGGGGAGATTCCGGCGAGCTTAGGCACGTGCCAGAGCTTGACACGTGTGAGACTAGGATTTAACCGGTTGTCCGGCGAGGTTCCCGCCGGCATCTGGGGGCTTCCGCACGTGTATCTTCTCGAGCTTGTCGACAACTCGTTTTCGGGTTCCATTGCGAGGACCATTGCGGGTGCCGGGAACTTGTCGCTGTTGATTTTGTCGAAGAATAACTTCTCGGGAACGATTCCCGATGAGGTTGGGTGGTTGGAGAATCTCGTACAGTTTTCCGCCAGTGATAATAAGTTCACTGGCTCGCTTCCTGATAGCATTGTGAATCTTGGGCAGCTTGGGATTCTCGATTTTCATAATAACAGACTCTCTGGGGAGTTGCCGAAAGGGATTCGTTCGTGGAAGAAGCTCAACGATTTGAATTTGGCCAACAATGAGATTGGTGGTACGATTCCTGATGAGATTGGGGGTTTGTCCGTGCTGAACTTTCTAGATCTTTCTAGCAACCGCTTTTCCGGGAAAGTCCCTCACGGTTTGCAGAATCTCAAGCTGAATCAGCTTAACTTGTCTTATAATCGTTTGACTGGTGAACTTCCTCCTCTCTTGGCTAAGGATATGTATAGGTCTAGTTTCCTTGGTAATCCTGGCTTGTGTGGAGATTTGAAGGGGTTGTGTGATGGTAGGGGTGAGGCAAAGAATGTAGGTTATGTTTGGCTGCTTCGAGCGATTTTTGTTGTAGCCACTTTGGTTTTCCTTGTAGGTGTGGTTTGGTTTTACTTTAGGTATAAGAATTTCCAGGACGCCAAGAGGGCGATTGATAAGTCAAAGTGGACGTTGATGTCGTTTCATAAACTGGGTTTTAGTGAAGATGAGATTTTGAATTGTCTTGATGAGGATAATGTGATCGGAAGTGGTTCCTCGGGTAAGGTGTACAAGGTTGTGCTTAGCAGTGGGGAGGTTGTTGCTGTGAAGAAGATATGGGGAGGGGTTAGGAAGGAGGTAGAGAGTGGGGATGTTGAAAAGGGTAGGGTTCAGGACAATGCTTTTGACGCGGAAGTTGAGACTTTGGGCAAGATCAGGCACAAGAATATAGTCAAGCTGTGGTGTTGCTGCACCACCAGGGATTGCAAGCTCTTGGTTTATGAATATATGCCTAATGGAAGTCTTGGTGATTTACTGCATAGTAGTAAAGGAGGGTTGTTGGATTGGCCAACAAGGTATAAGATAGCTGTGGATGCAGCAGAAGGCCTGTCTTATCTGCATCATGACTGTGTTCCCCCAATTGTTCATAGAGATGTGAAATCAAACAACATTCTATTGGATGGGGACTTTGGTGCGAGGGTGGCGGATTTTGGAGTAGCTAAGGCGGTTGAAACCACAGCAAAAGGAACTAAATCCATGTCCGTCATAGCTGGTTCTTGTGGCTATATTGCACCAGAATATGCATACACGCTTAGAGTGAATGAGAAGAGCGACATATACAGCTTTGGGGTTGTCATACTCGAGTTGGTTACTGGAAGACGCCCGGTGGACCCTGAATTTGGGGAGAAAGACGTAGTTAAGTGGGTGTGCACTACCTTGGACCAGAAAGGCGTGGACCATCTAATTGACTCACGGCTTGATTCTTGTTTCAAAGAAGAAATTTGCAAGGTCTTCAACATTGGACTCATGTGCACTAGTCCTCTTCCTATTAACCGGCCTTCAATGAGAAGAGTAGTGAAGATGTTGCAAGAGGTGGGCACAGATAACCAAACCAAGCCTGCCAAAAAAGATGGGAAGCTATCCCCTTATTACTATGACGATGCTTCGGATCATGGAAGTGTTGCTTAA 3000 0.501 MTQLLPIVVYVLLSVVAFVSCLNQEGLYLYQLKRSLDDPYSTLSSWNPRDATPCNWYGVTCAGDAFNTTVTELDLSDTNIGGPFPANILCRLPNLLSINFFNNSINQTLPLDISLCRSLRHLDLSQNLLTGPLPATLPLLPNLRYLDLTGNNFSGPIPDSFGTFQNLQVLSLVSNLLEGTIPPSLGNVSSLKMLNLSYNPFFPGRIPPELGNLTNLEVLWLTQCNLVGVIPASLGNLNKLQDLDLALNDLYGSIPSSLTQLTSLTQIELYNNSLSGELPRGMGNLTRLRLLDASMNHLTGKIPDELCSLPLESLNLYENRFEGELPASIADSENLYELRLFGNRLTGRLPENLGKNSPLRWLDVSSNQFWGPIPATLCDNGVLEELLVIYNLFSGEIPASLGTCQSLTRVRLGFNRLSGEVPAGIWGLPHVYLLELVDNSFSGSIARTIAGAGNLSLLILSKNNFSGTIPDEVGWLENLVQFSASDNKFTGSLPDSIVNLGQLGILDFHNNRLSGELPKGIRSWKKLNDLNLANNEIGGTIPDEIGGLSVLNFLDLSSNRFSGKVPHGLQNLKLNQLNLSYNRLTGELPPLLAKDMYRSSFLGNPGLCGDLKGLCDGRGEAKNVGYVWLLRAIFVVATLVFLVGVVWFYFRYKNFQDAKRAIDKSKWTLMSFHKLGFSEDEILNCLDEDNVIGSGSSGKVYKVVLSSGEVVAVKKIWGGVRKEVESGDVEKGRVQDNAFDAEVETLGKIRHKNIVKLWCCCTTRDCKLLVYEYMPNGSLGDLLHSSKGGLLDWPTRYKIAVDAAEGLSYLHHDCVPPIVHRDVKSNNILLDGDFGARVADFGVAKAVETTAKGTKSMSVIAGSCGYIAPEYAYTLRVNEKSDIYSFGVVILELVTGRRPVDPEFGEKDVVKWVCTTLDQKGVDHLIDSRLDSCFKEEICKVFNIGLMCTSPLPINRPSMRRVVKMLQEVGTDNQTKPAKKDGKLSPYYYDDASDHGSVA* 1000
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g1855 999 Gene3D Ribonuclease Inhibitor 331 617 IPR032675 -
Vra7g1855 999 SUPERFAMILY RNI-like 72 419 - -
Vra7g1855 999 MobiDBLite consensus disorder prediction 974 988 - -
Vra7g1855 999 Pfam Leucine Rich repeat 67 82 IPR001611 GO:0005515
Vra7g1855 999 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 5 981 - -
Vra7g1855 999 PANTHER LRR RECEPTOR-LIKE KINASE 5 981 - -
Vra7g1855 999 SMART LRR_typ_2 500 524 IPR003591 -
Vra7g1855 999 SMART LRR_typ_2 261 285 IPR003591 -
Vra7g1855 999 SMART LRR_typ_2 213 236 IPR003591 -
Vra7g1855 999 SMART LRR_typ_2 140 163 IPR003591 -
Vra7g1855 999 SMART LRR_typ_2 92 116 IPR003591 -
Vra7g1855 999 SMART LRR_typ_2 548 571 IPR003591 -
Vra7g1855 999 SMART LRR_typ_2 164 188 IPR003591 -
Vra7g1855 999 MobiDBLite consensus disorder prediction 970 999 - -
Vra7g1855 999 Gene3D Ribonuclease Inhibitor 181 329 IPR032675 -
Vra7g1855 999 Gene3D Phosphorylase Kinase; domain 1 670 773 - -
Vra7g1855 999 ProSitePatterns Serine/Threonine protein kinases active-site signature. 818 830 IPR008271 GO:0004672|GO:0006468
Vra7g1855 999 SUPERFAMILY RNI-like 351 589 - -
Vra7g1855 999 Gene3D Ribonuclease Inhibitor 22 180 IPR032675 -
Vra7g1855 999 ProSitePatterns Protein kinases ATP-binding region signature. 692 715 IPR017441 GO:0005524
Vra7g1855 999 ProSiteProfiles Protein kinase domain profile. 686 969 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra7g1855 999 Pfam Leucine rich repeat N-terminal domain 23 61 IPR013210 -
Vra7g1855 999 Gene3D Transferase(Phosphotransferase) domain 1 774 992 - -
Vra7g1855 999 SMART serkin_6 686 988 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra7g1855 999 Pfam Leucine Rich Repeat 118 137 IPR001611 GO:0005515
Vra7g1855 999 Pfam Leucine Rich Repeat 215 237 IPR001611 GO:0005515
Vra7g1855 999 Pfam Leucine rich repeat 141 200 IPR001611 GO:0005515
Vra7g1855 999 Pfam Protein kinase domain 688 909 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra7g1855 999 SUPERFAMILY Protein kinase-like (PK-like) 681 967 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g1855 Vra-Chr7 37972599 37977060 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g1855 19 999 Receptor kinase-like Gene Family AT1G28440 72.065 0.0 1447
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vra7g1855 Pkinase 3e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g1855 - - gmx:100819887 1781.92