Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g1852 ATGGAGGGAGAGGCTTGTTCCGAGGGAGAGAATAATCGGAAAAGGGGTGGCACAGATGATGATAGCAATGAGAATAACAACAACAACAGCAATCACGGAATTAGTAGCAAGATTGTGAATTCTAATGAGGGGCAGAGCAAGCCCAAGCGCCAGATGAAAACCCCTTTTCAACTTGAAACCCTCGAGAAGGCTTATGCTGTGGATAATTATCCGTCGGAGACGATGAGGGGAGAACTTTCTGAGAAATTGGGGTTGTCGGATCGGCAGCTTCAGATGTGGTTCTGCCATAGGAGGTTGAAGGACAAGAAGGACTTGTCGTCCAAGAAAGTGCCACGGAAGGTGGTGGCAGAGCCTTTGCCGGAATCACCTACAGATGACCCCATGCTGGGCCCCCCGGAGCTTGGTAATGAGTACGGATCCGGGTCCGGTTCAGGGTCCAGCCCTTATGCCCGAGTGGAGCCCCTGAACATTGTTCCCCGGGGTGTGCCTGGTTATTACGAGTCCCCACGGGCTATGATGGAGAGTAGAGCAATTGCTTGTGTTGAGGCGCAGTTAGGGGAGCCGTTGAGGGAAGATGGACCAATTCTAGGAGTAGAGTTTGATCCATTGCCACCAGATGCCTTTGGAGCACCTTTAGCTACCGAACAGCAGAAGCTACCTAGTTTCACCTATGACAGTAAAATATATGAAAGACATGATAGTAGAGCCAATAAGGCTATGGCAAGGACATTTCGTGACTATCGATCTCTACCAACCCAGCCTGGCACTAGGTCTGATACTTCTGGACCGTTCAGCAAATCTCATTTACATGATGCAATGGAAGGTCCTGCCAGAAATCTTCATTTGGCCCTTGGAAATGAAACTGTACCTAGAATTCGTCCTAGTCAAGGTCAATTTCGTGCTCGTCTTTTGTCTCAACAAGATAAGCAATTGATTCCGTATCAGTCTCCTACGCGGGATGATAATGCCGCCCCAATTAGGGAATTGGACCCAGCCATACTTAATGTTGGAACGAGCTCTCACTTTGCTGATCACCAAGTTGTTGTGCCAGAAAATCTCCATGCTCAACCTAGTGGTCAAGTTTTGCATAACAACAATGCAATACGGATTGAGAAGAAACGAAAGAGTGATGATGTTCGTGATGTAGAAGCGCATGAGATGAAAATCCGGAAAGAGATTGAGAAGCAAGATAACCTTAGACGAAAGAATGAAGAGAGGATGAGAAAAGAAATAGAGAAACAAGATCGTGAAAGAAAGAAGGAAGAAGAGAGGTTAATGCGTGAGAGACAACGAGAAGAAGAAAAAGCAAGACGTGAGCAAAAACGTGAAATTGAGCGAAGGGAAAAGTTTTTGCTGAAAGAAAATTTAAGAGCAGAAAAAATGAAGATAAGAGAAGAGCTTCGCAAAGAGAAAGAAGCAGAGAGAAGGAAAGCTGCCCTTGAGAAGGCTACTGCTCGTAGAATAGCTAAGGAATCTATGGAACTTATTGAGGATGAACAGCTGGAAATGATGGAGTTGGCTGCTTCAAGCAAGGGGCTTTCCTCTATTATTCATCTTGATTTTGATACTCTGCAACATATTGAGTCATTTAGGGATTCATTGTGTGTTTTCCCACCAAAGAGTGTCAAGCTAAGAAAACCATTTGCAATCAAACCCTGGATCAACTCAGAGAAGAATGTTGGCAATCTTCTCATGGTTTGGAGATTTTTGATTACTTTTGCTGATGTTCTGGAGTTATGGTCTTTTACTCTAGATGAGTTTGTTCAAGCATTTCATGACTATGATTCAAGATTATTGGGTGAGATACATGTTGCCCTGCTTAAGGTGGTAATAAAAGACATTGAAGATGTTGCAAGGACACCTTCTACAGGATTAGGATCGAATCAAAATGGTGCTGCTAATGCTGGAGGTGGTCATCCAGAGATTGTGGAAGGCGCATATGCATGGGGCTTTGACATTCGGAATTGGCATAAGCACTTGAATCTATTGACATGGCCAGAAATTTTCCGACAGCTAGCTTTATCTGCCGGATATGGACCACAGTTAAAGAAAAGAAGTGCTACCTGTTCATATGCAAATAATAAAGACGAGGGAAAAAGTTGTGAAGATATCATTTCTAAACTTCGAAATGGTTCAGCGGCTGAAAATGCAGTTGCAAAAATGCATGAGAGAGGTCTGTTAGCCCCTCGAAGATCTAGACATCGATTAACTCCTGGTACAGTTAAATTTGCAGCATTTCATGTTCTATCCCTTGAGGGTGATAAGGGATTGACAGTACTAGAGCTTGCAGAAAAAATTCAGAAATCTGGTCTTCGAGATCTGACAACCAGCAAGACACCTGAGGCATCAATTTCTGTTGCTTTAACAAGAGATACCAAGCTTTTTGAAAGAATAGCTCCGTCAACATATTGTGTTCGTCAAGCATTTAGAAAGAATCCTGCTGATGCCGAGTCCATTCTTTCAGAAGCAAGAAAGAAAATTCAGATATTTGAAAATGGGTTTCTAGCTGAGGAAGATACTGATGATGTTGAAAGAGAAGAGTCAGAGAGTGACGAAATTGATGAGGACCCTGAAGTTGATGATTTGGTAAATTTGTCAAGTGCAAACAAAACATCTGAACCGTGTGATGATTTCTCATCAAATGGAAAAGAAAATTTGGGCCATGATGTTGGACTTCAGGGTGAGTTTGATAAGGATCTGCCTCATTTTCCTGAGAGTTCTTCCAAGAAGGTTGATACTCCAATTGCTGTAACCGGGAAACCTGGTGCTTGTGAAGTTTTGAACGTTGGAAATCTTGGTGAAGATAATATGGAAATTGATGAAAGCAAGCCTGGAGAGTCATGGGTTCAAGGGCTTGCAGAAGGAGAATATTCTGACCTCAGTGTAGAGGAGCGTCTAAGTGCCCTTGTTGTGTTGGTTGGTGTGGCAAATGAAGGAAATTCAATCCGTATTGTTCTTGAGGATCGTTTGGAAGCAGCAAATGCTCTGAAGAAACAAATGTGGGCAGAAGCACAACTGGATAAATTTCGATTAAAAGATGATATTTTCAGTAAATCTGATTTTCCATCTCTTAATGGGAATAAAGTTGAAATACAATATTCTTGTCCCACCGTGGAGGGAAACCAAAGCCCTTCATTGCTTGGTATTAATATTGGCAACAATAGTAATGTTGTGCCCTCTCCCAGCACTGCAGAAAATCAAAAAGCCACTCCAGGTGTACAGAGCCTGTCTGTCGAAAAACACTCTTCAGTTCAAGATCTTTGCACTGGCCCAGATAACCCTCAGATTCAGACATTTGCACAGTATTCAAAAAGGTCACGGTCTCAGCTGAAATCTTATATTTTCCACATAGCAGAGGAGATGTGTGCTTACAGATCCTTACCCCTTGGGCAAGATCGAAGACGTAACCGTTATTGGCAATTTGTTGCATCTGCTTCTTCCAATGATCCTGGCTCTGGCAGGATCTTTGTCGAATTTCTTGATGGCAATTGGAGGCTTATTGATACTGAAGAGGCCTTTGATGTGCTTCTGAATTCCCTTGATTCGCGTGGGGTCAGGGAATCTCATTTGCGACTAATGTTGCAAAAGGTTGAGGGTTCCTTTAAGGAAAATGTTCGTAATAATACACAATGTTCTAAAGCTGGAAGCAGAGGCGAAACGCATGTTAAAAATGAAGCTGACGAAGCAGATTCCAGTCCTGATCGACATACCGGATCTGACAGTCCCAGTAGTACCCTTTGTGGCCTGAACTCTGACAGTTTGGAAACTTCCTCATCCTTCAAAATTGAGCTTGGGAAAAGTGAGAGCGACAAGAAATCTGCCTTGAGAAGGTATCAAGATTTTCAAAAGTGGACATGGAAAGAATGCTATAATTCATCAATATTATGTGCCATGAAATACGGGAAGAAAAGATGCAAACCTCAGGTTGTCGTCTGTGAGATCTGTCTCAATCCTTATTTCTATGAAGACTCCCATTGCAGTTGTTGCCACCGAACTTTTCCCTCAAATAATGGATTTAATTTTTCTAAACACGCATTTCAATGTGGAGACAAATTATCAAAAGAGATTTGTGTTTTGGATTCGTCTCTTCCCTTACGGACAAGATTGCTTAAGGCCCTGCTAGCTTATATTGAGGTTTCTATTCCACCCGAAGCATTTCAAGCAACTTGGATCGAAGATATTAGGAGGCATTGGAGTGTGAAGTTGAACAAATCATCTTCTGTAGAGGAACTGCTACAGATATTGGCCCTACTCGAGAGAGCATTGAAGCGTGACTTTCTATCATCAACCTTCTCTACAACAGGGGAACAGTTGGGGTTGAACACTGTGTCAGAGAGTGCTGCACAAACCTCTGCTGATCCTGAATCAGTTGCTGTCCTTCCATGGGTTCCACTGACCACTTCAGCCGTGTCTCTCAGACTTTTTGAGTTTGATGAATCAATTGTCTACGTACTGCATGAAAAACCTGAGCCTCGTGAGGAGAAAGAAGATAGGCAGTACATAAAGCTTCCTTCAAGACACAATGCTTCCAAATCTATTAAAGTGTCTGAAACAGCAGACATGGGACGTAATGAATTCATGAAAGTTAAATCTAATACTGTGAAGATTGTGCAAAGCAACAATAAACGAGGACGAGGTAGTGCTCTCAAAGGACGGAGTAAAAATATATCTAAAACCAAACAAAATAATGGCCGTCGGCACAGTGCAAAGGTTGCTGGAAATCTAAATCAAAGGGTAAAACAACAGGGAGGGGGATCACAAGGACAAGCTGGTGCACGTGGTCGTCGAACAGTCCGGAAAAGAAGAATGGGGAAAAAGGTTGTTGAAGATCTGTTGCTAGGCCATAGGGGTGCCTCTCGTAGCAACAACATTGCTAGAGAATCATTAAGAAGCTTGGATGAGGATTGGGATGATCAAAAAGGAAGTCCCATGACTCCCATCCATATGGGAACTGCTAACATTAGTAACAGCACTGAAGAGGCTGAATCTGATGACAATGTCCAAGCAATGGAGTCTGATGACAATGTCCAAGCAGTTGAGTCTGATGACAATGGCCAAGCAGTGGAATCTGATGACAATGGTCAAGCAATGGAATCTGATGACAACGGGCAAGCAGTAGAATCTGATGACAATGGCCAAGCTGTGGAATATGATCAAGGAAACTGGGAAATAGGTTTTAATGGTAATCCCAGCCGATGGCAGGGGGATCTGGTTGGAACAAGTGATGAAGATATTGAAGCTTCTGAAGATGACAATCACAATGATAATGGCATTGAAGAGAATGAAGAGGAGGATTCAGAGGGAGATATTATGAGCGAGGGTTCAGATGGTACTGCAAACAGAATTGTAAATGAAGAAGAAAGCTCAGATTCAGATGTCTCTGAAGATTCTTCTGATTAG 5400 0.4278 MEGEACSEGENNRKRGGTDDDSNENNNNNSNHGISSKIVNSNEGQSKPKRQMKTPFQLETLEKAYAVDNYPSETMRGELSEKLGLSDRQLQMWFCHRRLKDKKDLSSKKVPRKVVAEPLPESPTDDPMLGPPELGNEYGSGSGSGSSPYARVEPLNIVPRGVPGYYESPRAMMESRAIACVEAQLGEPLREDGPILGVEFDPLPPDAFGAPLATEQQKLPSFTYDSKIYERHDSRANKAMARTFRDYRSLPTQPGTRSDTSGPFSKSHLHDAMEGPARNLHLALGNETVPRIRPSQGQFRARLLSQQDKQLIPYQSPTRDDNAAPIRELDPAILNVGTSSHFADHQVVVPENLHAQPSGQVLHNNNAIRIEKKRKSDDVRDVEAHEMKIRKEIEKQDNLRRKNEERMRKEIEKQDRERKKEEERLMRERQREEEKARREQKREIERREKFLLKENLRAEKMKIREELRKEKEAERRKAALEKATARRIAKESMELIEDEQLEMMELAASSKGLSSIIHLDFDTLQHIESFRDSLCVFPPKSVKLRKPFAIKPWINSEKNVGNLLMVWRFLITFADVLELWSFTLDEFVQAFHDYDSRLLGEIHVALLKVVIKDIEDVARTPSTGLGSNQNGAANAGGGHPEIVEGAYAWGFDIRNWHKHLNLLTWPEIFRQLALSAGYGPQLKKRSATCSYANNKDEGKSCEDIISKLRNGSAAENAVAKMHERGLLAPRRSRHRLTPGTVKFAAFHVLSLEGDKGLTVLELAEKIQKSGLRDLTTSKTPEASISVALTRDTKLFERIAPSTYCVRQAFRKNPADAESILSEARKKIQIFENGFLAEEDTDDVEREESESDEIDEDPEVDDLVNLSSANKTSEPCDDFSSNGKENLGHDVGLQGEFDKDLPHFPESSSKKVDTPIAVTGKPGACEVLNVGNLGEDNMEIDESKPGESWVQGLAEGEYSDLSVEERLSALVVLVGVANEGNSIRIVLEDRLEAANALKKQMWAEAQLDKFRLKDDIFSKSDFPSLNGNKVEIQYSCPTVEGNQSPSLLGINIGNNSNVVPSPSTAENQKATPGVQSLSVEKHSSVQDLCTGPDNPQIQTFAQYSKRSRSQLKSYIFHIAEEMCAYRSLPLGQDRRRNRYWQFVASASSNDPGSGRIFVEFLDGNWRLIDTEEAFDVLLNSLDSRGVRESHLRLMLQKVEGSFKENVRNNTQCSKAGSRGETHVKNEADEADSSPDRHTGSDSPSSTLCGLNSDSLETSSSFKIELGKSESDKKSALRRYQDFQKWTWKECYNSSILCAMKYGKKRCKPQVVVCEICLNPYFYEDSHCSCCHRTFPSNNGFNFSKHAFQCGDKLSKEICVLDSSLPLRTRLLKALLAYIEVSIPPEAFQATWIEDIRRHWSVKLNKSSSVEELLQILALLERALKRDFLSSTFSTTGEQLGLNTVSESAAQTSADPESVAVLPWVPLTTSAVSLRLFEFDESIVYVLHEKPEPREEKEDRQYIKLPSRHNASKSIKVSETADMGRNEFMKVKSNTVKIVQSNNKRGRGSALKGRSKNISKTKQNNGRRHSAKVAGNLNQRVKQQGGGSQGQAGARGRRTVRKRRMGKKVVEDLLLGHRGASRSNNIARESLRSLDEDWDDQKGSPMTPIHMGTANISNSTEEAESDDNVQAMESDDNVQAVESDDNGQAVESDDNGQAMESDDNGQAVESDDNGQAVEYDQGNWEIGFNGNPSRWQGDLVGTSDEDIEASEDDNHNDNGIEENEEEDSEGDIMSEGSDGTANRIVNEEESSDSDVSEDSSD* 1800
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g1852 1799 MobiDBLite consensus disorder prediction 105 151 - -
Vra7g1852 1799 MobiDBLite consensus disorder prediction 1646 1663 - -
Vra7g1852 1799 MobiDBLite consensus disorder prediction 1566 1588 - -
Vra7g1852 1799 ProSiteProfiles HARE-type HTH domain profile. 739 808 IPR007759 GO:0006355
Vra7g1852 1799 SMART testlast3 557 616 IPR018501 -
Vra7g1852 1799 Pfam DDT domain 559 613 IPR018501 -
Vra7g1852 1799 PANTHER HOMEOBOX DOMAIN PROTEIN 15 1689 - -
Vra7g1852 1799 PANTHER HOMEOBOX DOMAIN PROTEIN 1679 1799 - -
Vra7g1852 1799 CDD homeodomain 49 98 IPR001356 GO:0003677
Vra7g1852 1799 MobiDBLite consensus disorder prediction 1 56 - -
Vra7g1852 1799 Coils Coil 382 447 - -
Vra7g1852 1799 MobiDBLite consensus disorder prediction 22 53 - -
Vra7g1852 1799 MobiDBLite consensus disorder prediction 1539 1605 - -
Vra7g1852 1799 MobiDBLite consensus disorder prediction 1218 1235 - -
Vra7g1852 1799 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 945 987 IPR028942 -
Vra7g1852 1799 SMART HOX_1 46 108 IPR001356 GO:0003677
Vra7g1852 1799 MobiDBLite consensus disorder prediction 1 21 - -
Vra7g1852 1799 ProSiteProfiles DDT domain profile. 557 616 IPR018501 -
Vra7g1852 1799 MobiDBLite consensus disorder prediction 1057 1076 - -
Vra7g1852 1799 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 1125 1197 IPR028941 -
Vra7g1852 1799 MobiDBLite consensus disorder prediction 1205 1252 - -
Vra7g1852 1799 MobiDBLite consensus disorder prediction 836 859 - -
Vra7g1852 1799 SUPERFAMILY Homeodomain-like 35 103 IPR009057 -
Vra7g1852 1799 Pfam HB1, ASXL, restriction endonuclease HTH domain 739 807 IPR007759 GO:0006355
Vra7g1852 1799 Coils Coil 453 484 - -
Vra7g1852 1799 MobiDBLite consensus disorder prediction 1622 1799 - -
Vra7g1852 1799 MobiDBLite consensus disorder prediction 1670 1709 - -
Vra7g1852 1799 MobiDBLite consensus disorder prediction 1742 1771 - -
Vra7g1852 1799 MobiDBLite consensus disorder prediction 399 440 - -
Vra7g1852 1799 Pfam Homeodomain 47 103 IPR001356 GO:0003677
Vra7g1852 1799 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 1679 1799 IPR044977 GO:0006357
Vra7g1852 1799 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 15 1689 IPR044977 GO:0006357
Vra7g1852 1799 MobiDBLite consensus disorder prediction 1627 1641 - -
Vra7g1852 1799 Gene3D - 32 106 - -
Vra7g1852 1799 MobiDBLite consensus disorder prediction 1236 1252 - -
Vra7g1852 1799 MobiDBLite consensus disorder prediction 1539 1558 - -
Vra7g1852 1799 ProSiteProfiles 'Homeobox' domain profile. 44 104 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g1852 Vra-Chr7 37906161 37917069 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g1852 4 1729 Homeobox Transcription Factor Family AT1G28420 47.175 0.0 1304
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Vra7g1852 WSD 7.1e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g1852 - - gmx:100784945 2718.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g1852 7 37906161 37917069 Vra10g1284 10 18225576 18236695 PCT