Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g1833 ATGGACGCAAGCAGGTCTGAGGGAAAGAGAGTCTTGAGGTACAGCGAGGAGGAGGAAGATGAAGAAGAAGAAGAAGAGGAAGAGGTTGAGACGGTTTTTGGAGAAGATGGAAGGAGGAATAAGAGAGTAATGAGAGATCTCTATGGAAAGAAAGGGTCCAAAGCTGGAGGCTCAATGCCACCTTCTTGTCAGGTCGATAACTGTGATGCTGATCTAAGTGAAGCTAAGCAATATCACAGAAGACACAAGGTCTGTGAGTACCATGCCAAGGTTCATTCCGTACACATGGCAGGGCTGCAACAAAGGTTTTGCCAACAATGTAGCAGATTCCATGAGCTGTCTGAATTTGATGAATCAAAAAGGAGTTGTAGAACACGTCTGGTTGGTCATAACGAGAGGCGACGCAAAAATGCAGTTGACTATCGTGGAGAGTAA 435 0.4552 MDASRSEGKRVLRYSEEEEDEEEEEEEEVETVFGEDGRRNKRVMRDLYGKKGSKAGGSMPPSCQVDNCDADLSEAKQYHRRHKVCEYHAKVHSVHMAGLQQRFCQQCSRFHELSEFDESKRSCRTRLVGHNERRRKNAVDYRGE* 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g1833 144 SUPERFAMILY SBT domain 61 141 IPR036893 GO:0003677|GO:0005634
Vra7g1833 144 Coils Coil 15 35 - -
Vra7g1833 144 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 16 137 IPR044817 GO:0003677
Vra7g1833 144 MobiDBLite consensus disorder prediction 1 36 - -
Vra7g1833 144 Gene3D - 53 124 IPR036893 GO:0003677|GO:0005634
Vra7g1833 144 MobiDBLite consensus disorder prediction 17 31 - -
Vra7g1833 144 MobiDBLite consensus disorder prediction 1 16 - -
Vra7g1833 144 PIRSF SBP 1 144 IPR017238 GO:0003677|GO:0003700|GO:0009908
Vra7g1833 144 ProSiteProfiles Zinc finger SBP-type profile. 60 137 IPR004333 GO:0003677
Vra7g1833 144 Pfam SBP domain 63 136 IPR004333 GO:0003677
Vra7g1833 144 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 3 16 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g1833 Vra-Chr7 37656019 37658168 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g1833 49 140 SBP-box Gene Family AT2G33810 65.217 2.56e-39 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Vra7g1833 SBP 1.1e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g1833 - - gmx:100527199 225.713
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g1833 7 37656019 37658168 Vra10g1299 10 18374952 18376934 PCT