Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g1828 ATGGCCGCACCTTCGCTTTCCTCCGCTCTCAATTCCCTCTCCCTCTCCGCCTCTTCCCGCTTCTCTCTCCTCCCTTCGCCGCCGCACACCGTCTCCCTCCTCTTCGCCAAACCCCAACACCACCCCTCCCTCCTCTGCGCCAAATGCAAACCCTCCGATGACATCGACACCTCCTTCTTCGACAACGTCAACCCATTGGAAGACATTGACTTCAACCCCCCAGAGCCCCCGGAGGGATTTGTCGCCCCTCCCTCCTTCGACGATGGCCCCCTCGAGACGGAGGACGAGATCGCCGCAGCCTATGAGGAGCTCTACGGCCCCGCCTTCAGCGGCGTTTCCGTGCTTGGGAATGACGTCTTCGAAACGGACGCCCTGGTGAAGCAGGACACGGGGTTCGGGTCCGGCTCGAAGAAGGAGAAGGTCCGCGACGGGTTCGAAGAGAGGGTGGTCCAGGTGAGGAGGGTGACGAAGGTTGTTAAGGGAGGGAAGCAGTTGCGCTTCAGAGCTGTCGTCATTGTCGGCGACAAGAAGGGCCAAGTCGGCGTCGGAGTTGGCAAGGCCAAGGAAGTCGTCGCCGCCGTTCAGAAGTCGGCCTCCAATGCCAGGAGGAACATCGTAAAGGTGCCAATGACTAAGTACTCCACTTTTCCCCACAGATCTGATGGAGATTATGGAGCAGCGAAGGTGATGCTTAGACCTGCTTCTCCCGGTACTGGAGTTATTGCAGGTGGGGCTGTGAGAATTGTTCTTGAAATGGCGGGAGTTGAGAATGCTTTGGGAAAGCAACTAGGGAGTAATAATGCACTGAACAATGCCAGAGCAACCGTTATTGCTGTGCAGAAAATGAAGCAGTTTCGAGAGGTTGCTGAGGAGCGCGGTATTCCCATGGAAGAATTATGGAAGTAA 906 0.5684 MAAPSLSSALNSLSLSASSRFSLLPSPPHTVSLLFAKPQHHPSLLCAKCKPSDDIDTSFFDNVNPLEDIDFNPPEPPEGFVAPPSFDDGPLETEDEIAAAYEELYGPAFSGVSVLGNDVFETDALVKQDTGFGSGSKKEKVRDGFEERVVQVRRVTKVVKGGKQLRFRAVVIVGDKKGQVGVGVGKAKEVVAAVQKSASNARRNIVKVPMTKYSTFPHRSDGDYGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVIAVQKMKQFREVAEERGIPMEELWK* 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g1828 301 PANTHER RIBOSOMAL S SUBUNIT 47 301 IPR000851 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Vra7g1828 301 Pfam Ribosomal protein S5, C-terminal domain 222 292 IPR005324 GO:0003735|GO:0005840|GO:0006412
Vra7g1828 301 Pfam Ribosomal protein S5, N-terminal domain 145 209 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Vra7g1828 301 ProSitePatterns Ribosomal protein S5 signature. 162 194 IPR018192 -
Vra7g1828 301 ProSiteProfiles S5 double stranded RNA-binding domain profile. 145 208 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Vra7g1828 301 SUPERFAMILY Ribosomal protein S5 domain 2-like 215 293 IPR020568 -
Vra7g1828 301 Gene3D - 132 207 - -
Vra7g1828 301 PANTHER 30S RIBOSOMAL PROTEIN S5, CHLOROPLASTIC 47 301 - -
Vra7g1828 301 TIGRFAM rpsE_bact: ribosomal protein uS5 144 298 IPR005712 GO:0003735|GO:0006412|GO:0015935
Vra7g1828 301 Hamap 30S ribosomal protein S5 [rpsE]. 125 298 IPR005712 GO:0003735|GO:0006412|GO:0015935
Vra7g1828 301 Gene3D - 211 300 IPR014721 -
Vra7g1828 301 SUPERFAMILY dsRNA-binding domain-like 141 210 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g1828 145 285 Cytoplasmic Ribosomal Protein Gene Family AT2G41840 31.544 1.37e-15 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g1828 K02988 - gmx:100820232 414.461