Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g1822 ATGGAGAACAACCCTAGTTCATCAACAAGTGATAGAAAATTGGTTGAGAGGAATAGAAGAAATCAAATGAAGGATCTTTTCTCCAAGCTCAACTCAGTTCTGCCTCATCAAAGTTCAAGGGAGGGAATTTCGCGTCCAGATCAGATAGGTGAAGCCATAGACTACATAAAGAACTTACAGATTAAGTTGGAGAAGATGAAGGAGAAAAAACACAACTTAACAGACATTGTAAGGTCAAGAACTGCTACCATGAATATGGAATTGAAATCTCCACAATTTAAGATCCAACAAATGGGTTCAGTCTTGGAGGTTGTTCTAGTATCTGGGTTGGATTTTCATTTCATTTTCAATGAGACAATTCGTGTTCTTCAAGAAGAAGGATCTGATATAGTTAATGCCAGTTATACTGTTGCTGAAAATGCAGTTCTCCATAAAATACACTGTCAGGTAGATGAATCTGCCAATGGAGCTTCGAGGATATCGGAGAAACTGAAGAATTTATGTCAATGGTCGGTAGCATGA 522 0.3793 MENNPSSSTSDRKLVERNRRNQMKDLFSKLNSVLPHQSSREGISRPDQIGEAIDYIKNLQIKLEKMKEKKHNLTDIVRSRTATMNMELKSPQFKIQQMGSVLEVVLVSGLDFHFIFNETIRVLQEEGSDIVNASYTVAENAVLHKIHCQVDESANGASRISEKLKNLCQWSVA* 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g1822 173 SMART finulus 13 65 IPR011598 GO:0046983
Vra7g1822 173 Pfam Helix-loop-helix DNA-binding domain 12 60 IPR011598 GO:0046983
Vra7g1822 173 MobiDBLite consensus disorder prediction 1 20 - -
Vra7g1822 173 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 1 169 IPR015660 GO:0003700|GO:0006357
Vra7g1822 173 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 7 59 IPR011598 GO:0046983
Vra7g1822 173 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 11 73 IPR036638 GO:0046983
Vra7g1822 173 Gene3D - 2 90 IPR036638 GO:0046983
Vra7g1822 173 PANTHER TRANSCRIPTION FACTOR BHLH162 1 169 - -
Vra7g1822 173 Coils Coil 49 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g1822 Vra-Chr7 37475427 37476780 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g1822 3 167 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 41.398 2.08e-42 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vra7g1822 HLH 6e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g1822 - - gmx:100810793 252.677
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g1822 7 37475427 37476780 Vra10g1307 10 18455032 18456325 PCT